Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

69843546 .. 69844107

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG502400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTCGACGTTGATGGCAAGGTGAGTGATCTGGTCCCTGATGGTGTAGGTGTGGATACGCTGGGTATTGATAGCATGGTGCGTGATCTGGCTGCTGATGCTGGTATCGTGGATACGCTGGGTATTGATGATGTGGTTGATCTGGGCTTTGACCGGATCTTCTTTGGTGGAGATGTATGCTGGCGATTGTGGGAGCCAGGTATAACTAACGCCACCCTCTGGCTTACAGAGGAGAAGTTTGATGCTCGGGTACTGGATCGGGCTTCCGCTGTTGGAGGCGGCAATCTGATGTTGGTGAAGGATGGCGGTCTGGTTTCGCCTGGGAGTGATCTGTGTCGGCTTGGTAGTGGTGGCATGTTGGTGGAATTGTACCAGTGCTTTACGGCGGCGGCTCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCGGCGGTAAATCGGAGCTCTAACCCTAGCGGGTGTCTTGGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.4

Weight (kDa)

4.17

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	8 cut(s)	267, 279, 306, 386, 389, 434, 437, 462
AclWI	GGATC	2 cut(s)	164, 264
AfaI	GTAC	2 cut(s)	252, 371
AfiI	CCNNNNNNNGG	2 cut(s)	219, 433
AjnI	CCWGG	2 cut(s)	196, 319
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw21I	GWGCWC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	164, 264
Ama87I	CYCGRG	2 cut(s)	246, 393
AoxI	GGCC	1 cut(s)	473
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	34, 473, 474
AsuHPI	GGTGA	3 cut(s)	34, 307, 415
AvaI	CYCGRG	2 cut(s)	246, 393
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	2 cut(s)	452, 477
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	8, 35, 296
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	2 cut(s)	198, 321
BciVI	GTATCC	2 cut(s)	49, 106
BfaI	CTAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	407
BfuI	GTATCC	2 cut(s)	49, 106
BisI	GCNGC	5 cut(s)	93, 280, 387, 390, 435
BlsI	GCNGC	5 cut(s)	94, 281, 388, 391, 436
Bme1390I	CCNGG	2 cut(s)	198, 321
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	246, 393
BmgT120I	GGNCC	3 cut(s)	34, 473, 474
BmiI	GGNNCC	3 cut(s)	36, 195, 475
BmrFI	CCNGG	2 cut(s)	198, 321
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	88, 232
BmuI	ACTGGG	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 433
Bse1I	ACTGG	3 cut(s)	258, 373, 434
BseBI	CCWGG	2 cut(s)	198, 321
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	219, 433
BseNI	ACTGG	3 cut(s)	258, 373, 434
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	2 cut(s)	61, 118
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	2 cut(s)	246, 393
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	20, 410
BslI	CCNNNNNNNGG	2 cut(s)	219, 433
BsmFI	GGGAC	2 cut(s)	20, 410
BsnI	GGCC	1 cut(s)	475
BsoBI	CYCGRG	2 cut(s)	246, 393
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	452, 477
Bsp143I	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
BspACI	CCGC	8 cut(s)	267, 279, 306, 386, 389, 434, 437, 462
BspANI	GGCC	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	36, 195, 475
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	164, 264
BsrI	ACTGG	3 cut(s)	258, 373, 434
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
Bst2UI	CCWGG	2 cut(s)	198, 321
BstC8I	GCNNGC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	6 cut(s)	31, 88, 142, 159, 259, 331
BstMBI	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	198, 321
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	196, 319
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuI	GTATCC	2 cut(s)	49, 106
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	380, 427
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	34, 473, 474
Csp6I	GTAC	2 cut(s)	251, 370
CviAII	CATG	2 cut(s)	76, 355
CviJI	RGCY	9 cut(s)	92, 147, 196, 223, 263, 340, 392, 450, 475
CviKI_1	RGCY	9 cut(s)	92, 147, 196, 223, 263, 340, 392, 450, 475
CviQI	GTAC	2 cut(s)	251, 370
DpnI	GATC	6 cut(s)	30, 87, 141, 158, 258, 330
DpnII	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
Ecl136II	GAGCTC	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	452, 477
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	246, 393
EcoICRI	GAGCTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	196, 319
EcoT38I	GRGCYC	2 cut(s)	452, 477
FaeI	CATG	2 cut(s)	79, 358
FaiI	YATR	4 cut(s)	77, 178, 203, 356
FaqI	GGGAC	2 cut(s)	20, 410
FatI	CATG	2 cut(s)	75, 354
FauI	CCCGC	1 cut(s)	455
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	5 cut(s)	93, 280, 387, 390, 435
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	452, 477
Fsp4HI	GCNGC	5 cut(s)	93, 280, 387, 390, 435
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	5 cut(s)	93, 280, 387, 390, 435
GsaI	CCCAGC	2 cut(s)	65, 122
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	2 cut(s)	79, 358
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	3 cut(s)	34, 307, 415
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	288, 447
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	79, 358
Kzo9I	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
LmnI	GCTCC	2 cut(s)	193, 447
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	88, 232
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	6 cut(s)	30, 87, 141, 158, 258, 330
MboI	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	452, 477
MluCI	AATT	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	223, 227, 269, 395
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	198, 321
MvaI	CCWGG	2 cut(s)	198, 321
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
NlaIII	CATG	2 cut(s)	79, 358
NlaIV	GGNNCC	3 cut(s)	36, 195, 475
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	94, 281, 388, 391, 436
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	196, 319
PspFI	CCCAGC	2 cut(s)	61, 118
PspGI	CCWGG	2 cut(s)	196, 319
PspN4I	GGNNCC	3 cut(s)	36, 195, 475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	34, 473, 474
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	252, 371
RsaNI	GTAC	2 cut(s)	251, 370
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	5
SatI	GCNGC	5 cut(s)	93, 280, 387, 390, 435
Sau3AI	GATC	6 cut(s)	28, 85, 139, 156, 256, 328
Sau96I	GGNCC	3 cut(s)	34, 473, 474
ScrFI	CCNGG	2 cut(s)	198, 321
SduI	GDGCHC	2 cut(s)	452, 477
SetI	ASST	7 cut(s)	12, 24, 52, 202, 406, 421, 452
SfaNI	GCATC	2 cut(s)	88, 232
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	8 cut(s)	267, 279, 306, 386, 389, 434, 437, 462
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	196, 319
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	365
TauI	GCSGC	4 cut(s)	282, 389, 392, 437
TscAI	CASTG	2 cut(s)	380, 434
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	380, 434
Van91I	CCANNNNNTGG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.