RchiOBHm_Chr3g0459241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000535
Physical Location & Seq
Forward (+)
7710214 .. 7711041
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42583

Sequence Viewer

Length: 828 bp
ATGCCTAACCCTCTGCCTCTCGCAAGAGAGTTTCCCTGTTGGCCTCCTCCCTTAAGGGGCGGCGGCGGTGTGCCTGCGATCAGGAAGAAAGGATCAGCCTTTCTTTATGGTCCCTATCTCGGTGTCTCCGGCGGGCTTCTCTGTCGGAACGCTTTGCTTGTAGGCCTTAGCCTACCTTTTCCCTTTGTTGCGACGGTCGACGTTGATGGCAAGGTGAGTGATCTGGTCCCTGATGGTGTCGGTGTGGATACGCTGGGTATTGATGGCATGGTGCGTGATCTGGCTGCTGATGCTGGTATCGTGGATACGCTGGTTATTGATGATGTGGTTGATCTGGGCTTTGACCGGATCTTCTCTGGTGGAGATGTATGCTGGCGATTGTGGGAGCCAGGTATAACTAACGTCACCCTCTGGCTTACAGAGGCGAAGTTTGATGCTCGGGTACTGGATCGGGCTTCCGCTGTTGGAGGCGGCAATCTGATGTTGGTGAAGGATGGCGGTCTGGTTTCGCCTGGGAGTGATATGTGTCGGCTTGGTAGTGGTGGCTTGTTGGTGGAATTGTACCAGTGCTTTACGGCGGCGGCTCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCGGCGGTAAATTGGAGCTCTAACCCTAGCGGTGGGTATCCTGGCTTGGGCTTTTTGGGCTCAGTTTTCTTTTGGGTGTGGGCTGGCTCTATGTTTTGGGGCAGCTGGAGTAGGGTGTCTTGGGCCCTAACTATATGTTACTTTATTTTTTCAGATGATGGAGTTGAGGGTGATTTTTCATCCTCTTCTCCTAGTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

28.79

Weight (kDa)

4.44

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 198
AclWI GGATC 3 cut(s) 100, 356, 456
AfaI GTAC 2 cut(s) 444, 563
AfiI CCNNNNNNNGG 5 cut(s) 56, 119, 625, 656, 671
AflII CTTAAG 1 cut(s) 52
AjnI CCWGG 3 cut(s) 388, 511, 664
AluBI AGCT 2 cut(s) 642, 729
AluI AGCT 2 cut(s) 642, 729
Alw21I GWGCWC 2 cut(s) 644, 823
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 3 cut(s) 100, 356, 456
Ama87I CYCGRG 2 cut(s) 438, 585
AoxI GGCC 3 cut(s) 41, 163, 747
ApaI GGGCCC 1 cut(s) 751
ApeKI GCWGC 2 cut(s) 284, 726
AspS9I GGNCC 4 cut(s) 110, 226, 747, 748
AsuHPI GGTGA 5 cut(s) 226, 397, 499, 607, 806
AvaI CYCGRG 2 cut(s) 438, 585
AvaII GGWCC 2 cut(s) 110, 226
BaeGI GKGCMC 1 cut(s) 751
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanII GRGCYC 3 cut(s) 644, 686, 751
Bbv12I GWGCWC 2 cut(s) 644, 823
BbvI GCAGC 2 cut(s) 271, 738
BccI CCATC 5 cut(s) 200, 227, 257, 488, 776
BceAI ACGGC 1 cut(s) 591
BciT130I CCWGG 3 cut(s) 390, 513, 666
BciVI GTATCC 3 cut(s) 241, 298, 672
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 2 cut(s) 651, 816
BfrI CTTAAG 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 599
BfuI GTATCC 3 cut(s) 241, 298, 672
BisI GCNGC 8 cut(s) 61, 64, 285, 472, 579, 582, 627, 727
BlsI GCNGC 8 cut(s) 62, 65, 286, 473, 580, 583, 628, 728
Bme1390I CCNGG 3 cut(s) 390, 513, 666
Bme18I GGWCC 2 cut(s) 110, 226
BmeT110I CYCGRG 2 cut(s) 438, 585
BmgT120I GGNCC 4 cut(s) 110, 226, 747, 748
BmiI GGNNCC 4 cut(s) 112, 228, 387, 749
BmrFI CCNGG 3 cut(s) 390, 513, 666
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 2 cut(s) 280, 424
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 751
Bpu10I CCTNAGC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 119, 625, 656, 671
Bse1I ACTGG 3 cut(s) 450, 565, 626
BseBI CCWGG 3 cut(s) 390, 513, 666
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 499, 803
BseLI CCNNNNNNNGG 5 cut(s) 56, 119, 625, 656, 671
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 450, 565, 626
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 2 cut(s) 271, 738
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 43, 165, 749
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 644, 823
BsiHKCI CYCGRG 2 cut(s) 438, 585
BsiSI CCGG 2 cut(s) 129, 346
BslFI GGGAC 3 cut(s) 96, 212, 602
BslI CCNNNNNNNGG 5 cut(s) 56, 119, 625, 656, 671
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 3 cut(s) 96, 212, 602
BsnI GGCC 3 cut(s) 43, 165, 749
BsoBI CYCGRG 2 cut(s) 438, 585
Bsp120I GGGCCC 1 cut(s) 747
Bsp1286I GDGCHC 4 cut(s) 644, 686, 751, 823
Bsp143I GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
BspANI GGCC 3 cut(s) 43, 165, 749
BspCNI CTCAG 1 cut(s) 698
BspLI GGNNCC 4 cut(s) 112, 228, 387, 749
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 3 cut(s) 100, 356, 456
BspTI CTTAAG 1 cut(s) 52
BsrI ACTGG 3 cut(s) 450, 565, 626
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
Bst2UI CCWGG 3 cut(s) 390, 513, 666
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 814
BstAFI CTTAAG 1 cut(s) 52
BstC8I GCNNGC 4 cut(s) 75, 134, 374, 709
BstDEI CTNAG 2 cut(s) 167, 685
BstF5I GGATG 2 cut(s) 499, 803
BstKTI GATC 7 cut(s) 81, 95, 223, 280, 334, 351, 451
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 290, 681
BstNI CCWGG 3 cut(s) 390, 513, 666
BstSCI CCNGG 3 cut(s) 388, 511, 664
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 2 cut(s) 271, 738
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuI GTATCC 3 cut(s) 241, 298, 672
BsuRI GGCC 3 cut(s) 43, 165, 749
BtsCI GGATG 2 cut(s) 499, 803
BtsIMutI CAGTG 2 cut(s) 572, 619
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 4 cut(s) 75, 134, 374, 709
Cfr13I GGNCC 4 cut(s) 110, 226, 747, 748
Csp6I GTAC 2 cut(s) 443, 562
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 443, 562
DdeI CTNAG 2 cut(s) 167, 685
DpnI GATC 7 cut(s) 80, 94, 222, 279, 333, 350, 450
DpnII GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Ecl136II GAGCTC 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 3 cut(s) 644, 686, 751
Eco47I GGWCC 2 cut(s) 110, 226
Eco53kI GAGCTC 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 438, 585
EcoICRI GAGCTC 1 cut(s) 642
EcoO109I RGGNCCY 1 cut(s) 748
EcoRII CCWGG 3 cut(s) 388, 511, 664
EcoT38I GRGCYC 3 cut(s) 644, 686, 751
FaeI CATG 1 cut(s) 271
FaiI YATR 8 cut(s) 108, 269, 370, 395, 524, 716, 758, 760
FaqI GGGAC 3 cut(s) 96, 212, 602
FatI CATG 1 cut(s) 267
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 8 cut(s) 61, 64, 285, 472, 579, 582, 627, 727
FokI GGATG 2 cut(s) 506, 790
FriOI GRGCYC 3 cut(s) 644, 686, 751
Fsp4HI GCNGC 8 cut(s) 61, 64, 285, 472, 579, 582, 627, 727
FspBI CTAG 2 cut(s) 651, 816
GluI GCNGC 8 cut(s) 61, 64, 285, 472, 579, 582, 627, 727
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 751
HaeIII GGCC 3 cut(s) 43, 165, 749
HapII CCGG 2 cut(s) 129, 346
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 2 cut(s) 129, 346
HphI GGTGA 5 cut(s) 226, 397, 499, 607, 806
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 147, 480, 778
Hpy188III TCNNGA 2 cut(s) 82, 587
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 196, 203
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 201, 402
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 681
HpyF3I CTNAG 2 cut(s) 167, 685
HpySE526I ACGT 2 cut(s) 201, 402
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
LmnI GCTCC 2 cut(s) 385, 639
Lsp1109I GCAGC 2 cut(s) 271, 738
LweI GCATC 2 cut(s) 280, 424
MaeI CTAG 2 cut(s) 651, 816
MaeII ACGT 2 cut(s) 201, 402
MaeIII GTNAC 3 cut(s) 403, 613, 761
MalI GATC 7 cut(s) 80, 94, 222, 279, 333, 350, 450
MboI GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
MboII GAAGA 3 cut(s) 97, 343, 801
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 4 cut(s) 644, 686, 751, 823
MluCI AATT 2 cut(s) 557, 634
MmeI TCCRAC 2 cut(s) 125, 445
MseI TTAA 2 cut(s) 53, 826
MspA1I CMGCKG 2 cut(s) 461, 729
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 2 cut(s) 129, 346
MspR9I CCNGG 3 cut(s) 390, 513, 666
MvaI CCWGG 3 cut(s) 390, 513, 666
MwoI GCNNNNNNNGC 2 cut(s) 290, 681
NdeII GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 4 cut(s) 112, 228, 387, 749
NmuCI GTSAC 2 cut(s) 403, 613
PaqCI CACCTGC 1 cut(s) 599
PceI AGGCCT 1 cut(s) 165
PkrI GCNGC 8 cut(s) 62, 65, 286, 473, 580, 583, 628, 728
Psp124BI GAGCTC 1 cut(s) 644
Psp6I CCWGG 3 cut(s) 388, 511, 664
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 3 cut(s) 388, 511, 664
PspN4I GGNNCC 4 cut(s) 112, 228, 387, 749
PspOMI GGGCCC 1 cut(s) 747
PspPI GGNCC 4 cut(s) 110, 226, 747, 748
PsuI RGATCY 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 729
RsaI GTAC 2 cut(s) 444, 563
RsaNI GTAC 2 cut(s) 443, 562
SacI GAGCTC 1 cut(s) 644
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 53, 826
SatI GCNGC 8 cut(s) 61, 64, 285, 472, 579, 582, 627, 727
Sau3AI GATC 7 cut(s) 78, 92, 220, 277, 331, 348, 448
Sau96I GGNCC 4 cut(s) 110, 226, 747, 748
ScrFI CCNGG 3 cut(s) 390, 513, 666
SduI GDGCHC 4 cut(s) 644, 686, 751, 823
SetI ASST 9 cut(s) 178, 204, 216, 394, 405, 598, 613, 644, 731
SfaNI GCATC 2 cut(s) 280, 424
SinI GGWCC 2 cut(s) 110, 226
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 557, 634
SseBI AGGCCT 1 cut(s) 165
SspMI CTAG 2 cut(s) 651, 816
SstI GAGCTC 1 cut(s) 644
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 388, 511, 664
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 204, 405
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 557, 634
TauI GCSGC 6 cut(s) 63, 66, 474, 581, 584, 629
Tru1I TTAA 2 cut(s) 53, 826
Tru9I TTAA 2 cut(s) 53, 826
TscAI CASTG 2 cut(s) 572, 626
TseFI GTSAC 2 cut(s) 403, 613
TseI GCWGC 2 cut(s) 284, 726
Tsp45I GTSAC 2 cut(s) 403, 613
TspDTI ATGAA 1 cut(s) 792
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 2 cut(s) 572, 626
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 110, 226
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 651, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.