Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015178.1

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

4713 .. 6637

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015178.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggatcgaggttctggaaaggccgccggtgatctggtgtttttggtggcggcgccttccacggtgacggtggtagcggcgtctattgtggtgggtcaatggtgcatttcgacgacgaccagaaagggcatgggtgatggtccgatcggccttgccttggcgaagatgcagaggtacttttccgttggacggcgttacagttctggaagggtggccggacgttgggctacggctgctgctgttggagttgttggcaggtgctttacggcggcggcgcgggacggaggtggtggttatgcaggtatcacccactgggatgtgttagatcggagctctaaccctagggtttgggctcttggctttgggctttttgggctcaggtttctttgggtgtggactgaccctatgcattggggctgccgtcgtttctctttcctcgctccttctcctccctgcactgccatcgtcagttcgtcaccctccgtccaacggcgagtgttaactcatccaccaaatgatgcagcggaagaagaatgctcagtagtggagattacagataagctggaagaagaagtgcactcttgctcatctaccaagatttcaagtgctcaagatgacatagagatggcttcagcagttactgaagcaactaagttcacgacttgttcaagtgcatcgcaagataatgaagaagatgaagttttaggaggagaagcagtgcttttaaccgaaaagcattcagtttcagttgaggcatggtttcattgtcaaatattcactttgtcaggccaatttgtcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

267

Amino Acids

28.57

Weight (kDa)

5.7

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	246
Acc36I	ACCTGC	2 cut(s)	246, 290
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	1 cut(s)	277
AciI	CCGC	7 cut(s)	24, 50, 77, 269, 272, 277, 524
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	615, 663
AcyI	GRCGYC	2 cut(s)	53, 80
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	157, 189, 222, 489
AgsI	TTSAA	2 cut(s)	603, 669
AluBI	AGCT	2 cut(s)	333, 562
AluI	AGCT	2 cut(s)	333, 562
Alw21I	GWGCWC	3 cut(s)	335, 579, 610
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	4 cut(s)	21, 148, 213, 787
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	4 cut(s)	233, 236, 417, 521
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	55, 277
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	5 cut(s)	41, 76, 146, 298, 468
AvaII	GGWCC	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	3 cut(s)	335, 355, 378
Bbv12I	GWGCWC	3 cut(s)	335, 579, 610
BbvI	GCAGC	4 cut(s)	220, 223, 404, 533
BccI	CCATC	3 cut(s)	131, 470, 619
BceAI	ACGGC	5 cut(s)	206, 246, 282, 405, 506
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	2 cut(s)	246, 290
BisI	GCNGC	9 cut(s)	24, 51, 78, 234, 237, 270, 273, 418, 522
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	9 cut(s)	25, 52, 79, 235, 238, 271, 274, 419, 523
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	156, 508, 683
BmuI	ACTGGG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	594
BsaHI	GRCGYC	2 cut(s)	53, 80
BsaJI	CCNNGG	3 cut(s)	60, 156, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 189, 222, 489
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	60, 156, 341
BseGI	GGATG	2 cut(s)	322, 505
BseLI	CCNNNNNNNGG	4 cut(s)	157, 189, 222, 489
BseMII	CTCAG	2 cut(s)	391, 552
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	438, 723
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	4 cut(s)	220, 223, 404, 533
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	4 cut(s)	23, 150, 215, 789
BshNI	GGYRCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	335, 579, 610
BsiSI	CCGG	2 cut(s)	27, 216
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	157, 189, 222, 489
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	2 cut(s)	539, 736
BsnI	GGCC	4 cut(s)	23, 150, 215, 789
Bsp1286I	GDGCHC	5 cut(s)	335, 355, 378, 579, 610
Bsp143I	GATC	4 cut(s)	4, 31, 144, 325
BspACI	CCGC	7 cut(s)	24, 50, 77, 269, 272, 277, 524
BspANI	GGCC	4 cut(s)	23, 150, 215, 789
BspCNI	CTCAG	2 cut(s)	390, 551
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	2 cut(s)	246, 290
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	60, 156, 341
BssMI	GATC	4 cut(s)	4, 31, 144, 325
BssNI	GRCGYC	2 cut(s)	53, 80
BssT1I	CCWWGG	2 cut(s)	156, 341
Bst4CI	ACNGT	3 cut(s)	64, 70, 200
BstACI	GRCGYC	2 cut(s)	53, 80
BstDEI	CTNAG	3 cut(s)	377, 538, 651
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	322, 505
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	55, 277
BstKTI	GATC	4 cut(s)	7, 34, 147, 328
BstMBI	GATC	4 cut(s)	4, 31, 144, 325
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 373
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	220, 223, 404, 533
BsuRI	GGCC	4 cut(s)	23, 150, 215, 789
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	322, 505
BtsI	GCAGTG	2 cut(s)	456, 723
BtsIMutI	CAGTG	3 cut(s)	310, 456, 723
BveI	ACCTGC	2 cut(s)	246, 290
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	2 cut(s)	55, 277
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	130, 756
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	377, 538, 651
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	4 cut(s)	6, 33, 146, 327
DpnII	GATC	4 cut(s)	4, 31, 144, 325
EaeI	YGGCCR	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	156, 341
Eco24I	GRGCYC	3 cut(s)	335, 355, 378
Eco47I	GGWCC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	615, 663
EcoICRI	GAGCTC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	156, 341
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	3 cut(s)	335, 355, 378
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	156, 341
FaeI	CATG	2 cut(s)	133, 759
FaiI	YATR	7 cut(s)	131, 297, 407, 620, 757, 800, 802
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	129, 755
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	9 cut(s)	24, 51, 78, 234, 237, 270, 273, 418, 522
FokI	GGATG	2 cut(s)	329, 492
FriOI	GRGCYC	3 cut(s)	335, 355, 378
Fsp4HI	GCNGC	9 cut(s)	24, 51, 78, 234, 237, 270, 273, 418, 522
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	2 cut(s)	54, 276
GluI	GCNGC	9 cut(s)	24, 51, 78, 234, 237, 270, 273, 418, 522
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	4 cut(s)	23, 150, 215, 789
HapII	CCGG	2 cut(s)	27, 216
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	55, 277
Hin1I	GRCGYC	2 cut(s)	53, 80
Hin1II	CATG	2 cut(s)	133, 759
Hin6I	GCGC	2 cut(s)	53, 275
HinP1I	GCGC	2 cut(s)	53, 275
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HpaI	GTTAAC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	27, 216
HphI	GGTGA	5 cut(s)	41, 76, 146, 298, 468
Hpy166II	GTNNAC	4 cut(s)	396, 501, 577, 657
Hpy188I	TCNGA	2 cut(s)	144, 330
Hpy188III	TCNNGA	4 cut(s)	15, 204, 611, 658
Hpy8I	GTNNAC	4 cut(s)	396, 501, 577, 657
Hpy99I	CGWCG	3 cut(s)	115, 118, 426
HpyAV	CCTTC	3 cut(s)	66, 201, 453
HpyCH4III	ACNGT	3 cut(s)	64, 70, 200
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	8 cut(s)	105, 169, 299, 409, 456, 521, 577, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 373
HpyF3I	CTNAG	3 cut(s)	377, 538, 651
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	2 cut(s)	53, 80
Hsp92II	CATG	2 cut(s)	133, 759
HspAI	GCGC	2 cut(s)	53, 275
KasI	GGCGCC	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	4, 31, 144, 325
LmnI	GCTCC	2 cut(s)	330, 445
Lsp1109I	GCAGC	4 cut(s)	220, 223, 404, 533
LweI	GCATC	3 cut(s)	156, 508, 683
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	4 cut(s)	64, 194, 474, 637
MalI	GATC	4 cut(s)	6, 33, 146, 327
MboI	GATC	4 cut(s)	4, 31, 144, 325
MboII	GAAGA	7 cut(s)	175, 539, 542, 578, 581, 701, 704
MhlI	GDGCHC	5 cut(s)	335, 355, 378, 579, 610
MluCI	AATT	1 cut(s)	791
Mly113I	GGCGCC	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	166, 223, 511
MnlI	CCTC	7 cut(s)	165, 278, 446, 459, 490, 701, 745
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	2 cut(s)	500, 725
MslI	CAYNNNNRTG	2 cut(s)	315, 623
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	2 cut(s)	27, 216
Mva1269I	GAATGC	2 cut(s)	539, 736
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	233, 373
NarI	GGCGCC	1 cut(s)	53
NdeII	GATC	4 cut(s)	4, 31, 144, 325
NlaIII	CATG	2 cut(s)	133, 759
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	64, 474
NsiI	ATGCAT	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	246
PctI	GAATGC	2 cut(s)	539, 736
PkrI	GCNGC	9 cut(s)	25, 52, 79, 235, 238, 271, 274, 419, 523
Ple19I	CGATCG	1 cut(s)	147
PluTI	GGCGCC	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	641
PvuI	CGATCG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	315, 623
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	500, 725
SatI	GCNGC	9 cut(s)	24, 51, 78, 234, 237, 270, 273, 418, 522
Sau3AI	GATC	4 cut(s)	4, 31, 144, 325
Sau96I	GGNCC	1 cut(s)	140
SduI	GDGCHC	5 cut(s)	335, 355, 378, 579, 610
SetI	ASST	9 cut(s)	13, 176, 223, 260, 289, 304, 335, 383, 564
SfaNI	GCATC	3 cut(s)	156, 508, 683
SfoI	GGCGCC	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	315, 623
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	1 cut(s)	791
SsiI	CCGC	7 cut(s)	24, 50, 77, 269, 272, 277, 524
SspDI	GGCGCC	1 cut(s)	52
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	335
StyI	CCWWGG	2 cut(s)	156, 341
TaaI	ACNGT	3 cut(s)	64, 70, 200
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	7, 110
TasI	AATT	1 cut(s)	791
TauI	GCSGC	5 cut(s)	26, 53, 80, 272, 275
Tru1I	TTAA	2 cut(s)	500, 725
Tru9I	TTAA	2 cut(s)	500, 725
TscAI	CASTG	3 cut(s)	317, 463, 723
TseFI	GTSAC	2 cut(s)	64, 474
TseI	GCWGC	4 cut(s)	233, 236, 417, 521
Tsp45I	GTSAC	2 cut(s)	64, 474
TspDTI	ATGAA	3 cut(s)	702, 711, 752
TspGWI	ACGGA	3 cut(s)	172, 297, 472
TspRI	CASTG	3 cut(s)	317, 463, 723
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 127
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.