Rh2BG353100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000535
Physical Location & Seq
Forward (+)
48409808 .. 48420200
10393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG353100.1

Sequence Viewer

Length: 750 bp
ATGGCCGGCGACGGTGAATCTCTGACTACGGGGGTGGGGATTTTCTTCTTCCCTTTCTCTGTGATCGATATTGCTACTGGGCAGCGAAGAAATCTGACATTGATTGGGATGGATGATGGCTTCGAGGTCGGTTTTACTCTTGACATCGACGAAGACTATAGAGCTTGGGTTGCTTCTGGCGTTCGTTCTCTGGTGAGATCGAGATTGGAGCGACGACCTATGGTGTTGTCAATGGTTCGGGGTACTGGAAAGGGCGCTGGTGACCTGGTTTGTTCGGCGGGTGATGGCGACCTTGGCAACAAGGGTAGTGTTGGTCGTGGCGGCCTGCATCGGGAACAGATCTGTGAGCGTTTTGATCAGGGTGATACAGCAGCGTCTTGCACGGTGGTGATGGCAGACAAGGATGATTGTGGTGGCTTCCTTAAAATTATGCAAAAAAAAATGAAGAGGCTGATATTGAGGAGCTCATCAAAGCAGTTGCATATCAGGTGGCAAAGTAATTGTCAGTGGAACAGCAGTTGGAGAGATGGGCACTACATATCTGCTCTTGGTGATGATAACTTGAACAGAGATTTTGCTGTACAACAGGGATATGTTGACTATCTTGGTTTAGGAAATTGCTGGTTTTGGGGTCTGAGGACTATTGATAGTATATTAGATGACCTTGAAAGGGAGATTGATAATGGAGTGAACACTTACCAGGCAATGTGGAATGATAGCCCGAAACAGGATGATATCACTATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.73

Weight (kDa)

5.02

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 278, 321
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 244, 582
AfiI CCNNNNNNNGG 3 cut(s) 331, 670, 727
AgsI TTSAA 2 cut(s) 565, 668
AjnI CCWGG 2 cut(s) 264, 699
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 2 cut(s) 164, 465
AluI AGCT 2 cut(s) 164, 465
Alw21I GWGCWC 1 cut(s) 467
AoxI GGCC 2 cut(s) 3, 322
ApeKI GCWGC 2 cut(s) 82, 371
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 7 cut(s) 26, 205, 272, 293, 374, 400, 563
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 94, 383
BccI CCATC 5 cut(s) 103, 110, 278, 385, 521
BciT130I CCWGG 2 cut(s) 266, 701
BclI TGATCA 1 cut(s) 355
BfmI CTRYAG 2 cut(s) 157, 746
BfoI RGCGCY 1 cut(s) 258
BglII AGATCT 1 cut(s) 339
BisI GCNGC 3 cut(s) 83, 322, 372
BlsI GCNGC 3 cut(s) 84, 323, 373
Bme1390I CCNGG 2 cut(s) 266, 701
BmrFI CCNGG 2 cut(s) 266, 701
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 670, 727
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 82, 250
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 266, 701
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 4 cut(s) 114, 118, 409, 736
BseLI CCNNNNNNNGG 3 cut(s) 331, 670, 727
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 626
BseNI ACTGG 2 cut(s) 82, 250
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 2 cut(s) 94, 383
BshFI GGCC 2 cut(s) 5, 324
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 331, 670, 727
BsnI GGCC 2 cut(s) 5, 324
Bsp1286I GDGCHC 2 cut(s) 467, 534
Bsp1407I TGTACA 1 cut(s) 580
Bsp143I GATC 4 cut(s) 63, 197, 339, 355
BspACI CCGC 2 cut(s) 278, 321
BspANI GGCC 2 cut(s) 5, 324
BspCNI CTCAG 1 cut(s) 627
BspDI ATCGAT 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 580
BsrI ACTGG 2 cut(s) 82, 250
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 63, 197, 339, 355
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 266, 701
Bst4CI ACNGT 2 cut(s) 14, 385
Bst6I CTCTTC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 7, 326
BstDEI CTNAG 1 cut(s) 635
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 4 cut(s) 114, 118, 409, 736
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 66, 200, 342, 358
BstMBI GATC 4 cut(s) 63, 197, 339, 355
BstMWI GCNNNNNNNGC 2 cut(s) 170, 294
BstNI CCWGG 2 cut(s) 266, 701
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 264, 699
BstSFI CTRYAG 2 cut(s) 157, 746
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 94, 383
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 5, 324
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 4 cut(s) 114, 118, 409, 736
BtsIMutI CAGTG 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 7, 326
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 363
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 2 cut(s) 243, 581
CviJI RGCY 8 cut(s) 5, 120, 164, 324, 417, 451, 465, 720
CviKI_1 RGCY 8 cut(s) 5, 120, 164, 324, 417, 451, 465, 720
CviQI GTAC 2 cut(s) 243, 581
DdeI CTNAG 1 cut(s) 635
DpnI GATC 4 cut(s) 65, 199, 341, 357
DpnII GATC 4 cut(s) 63, 197, 339, 355
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 467
Eco32I GATATC 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 465
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 264, 699
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 292
FaiI YATR 9 cut(s) 159, 221, 431, 483, 539, 594, 653, 743, 748
FauI CCCGC 1 cut(s) 271
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 83, 322, 372
FokI GGATG 4 cut(s) 121, 125, 416, 743
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 3 cut(s) 83, 322, 372
GlaI GCGC 1 cut(s) 256
GluI GCNGC 3 cut(s) 83, 322, 372
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 2 cut(s) 5, 324
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 257
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 6
HphI GGTGA 7 cut(s) 26, 205, 272, 293, 374, 400, 563
Hpy166II GTNNAC 2 cut(s) 598, 691
Hpy188I TCNGA 3 cut(s) 24, 96, 636
Hpy188III TCNNGA 3 cut(s) 140, 201, 332
Hpy8I GTNNAC 2 cut(s) 598, 691
Hpy99I CGWCG 3 cut(s) 14, 152, 216
HpyCH4III ACNGT 2 cut(s) 14, 385
HpyCH4V TGCA 4 cut(s) 328, 381, 433, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 294
HpyF3I CTNAG 1 cut(s) 635
HspAI GCGC 1 cut(s) 255
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 63, 197, 339, 355
LmnI GCTCC 2 cut(s) 208, 462
Lsp1109I GCAGC 2 cut(s) 94, 383
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 260
MalI GATC 4 cut(s) 65, 199, 341, 357
MboI GATC 4 cut(s) 63, 197, 339, 355
MboII GAAGA 5 cut(s) 37, 40, 99, 164, 457
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 467, 534
MluCI AATT 3 cut(s) 426, 499, 616
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 4 cut(s) 118, 441, 453, 630
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 266, 701
MvaI CCWGG 2 cut(s) 266, 701
MwoI GCNNNNNNNGC 2 cut(s) 170, 294
NaeI GCCGGC 1 cut(s) 7
NdeII GATC 4 cut(s) 63, 197, 339, 355
NgoMIV GCCGGC 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 260
OliI CACNNNNGTG 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 84, 323, 373
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 264, 699
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 2 cut(s) 264, 699
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 2 cut(s) 244, 582
RsaNI GTAC 2 cut(s) 243, 581
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 83, 322, 372
Sau3AI GATC 4 cut(s) 63, 197, 339, 355
ScrFI CCNGG 2 cut(s) 266, 701
SduI GDGCHC 2 cut(s) 467, 534
SetI ASST 8 cut(s) 129, 166, 220, 267, 294, 467, 491, 666
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 2 cut(s) 157, 746
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 3 cut(s) 426, 499, 616
SsiI CCGC 2 cut(s) 278, 321
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 264, 699
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 14, 385
TaqI TCGA 4 cut(s) 66, 123, 147, 200
TasI AATT 3 cut(s) 426, 499, 616
TatI WGTACW 1 cut(s) 580
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 82, 371
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.