RLG00000015398

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000535
Physical Location & Seq
Reverse (-)
65532413 .. 65534434
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015398

Sequence Viewer

Length: 588 bp
ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCCTGTCATGCTTTGTTTTAAGGTGCGCTGCAGGTCGTTTCTCTTTGCTTTTCCTTCTCCTTGGACTCGTTGTTAGTGGTTTTGATGGAGGACTTTCCTTGATTCTTGATGGGTCGGGTGATGGAGGTTATGGGGATAACGCAATTGATCCGTGGACGTGGAGGTGGAGGGGTTTTCTACCCTCTGTTATTCGCGTTAATGGCAGCCTAACAACCTACTTGAGCCCAGAGCATCATCGAGGGCCAGTCGCGGCTGCTGCTGCTGAAGTTGATGGCGGCAATCTAGTGTTGGTGAAGGACGGCGCTCTGATTCTGTTTAGGAGTGGTCTGTGTCGGCTTGGTCGTGGTGGCTTGTTGGTGGAATGGTACCAGTGCTTTGCGGCGGCGGCGCGGGATGGAGGTGGTGGTTATGCAGATGTCACCCGTTGGGCCGTGTTCGATCGGAGCTCTAACCCTAGCGTTTGGTCTCTTGGCTTTGGTCTTTTTTGGCTCAGGAAAGGGGAGAATTCAACACCAAAATATAGGCAGGACAGCAGCTGTGACAAAGATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

20.92

Weight (kDa)

6.1

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccII CGCG 3 cut(s) 225, 281, 421
AciI CCGC 6 cut(s) 281, 306, 410, 413, 416, 421
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 540
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 2 cut(s) 477, 567
AluI AGCT 2 cut(s) 477, 567
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 567
AoxI GGCC 3 cut(s) 31, 272, 459
ApeKI GCWGC 6 cut(s) 59, 234, 284, 287, 290, 564
ApoI RAATTY 1 cut(s) 535
Asp718I GGTACC 1 cut(s) 396
AspLEI GCGC 3 cut(s) 59, 335, 421
AspS9I GGNCC 2 cut(s) 272, 459
AsuHPI GGTGA 3 cut(s) 161, 334, 442
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 2 cut(s) 257, 479
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 6 cut(s) 46, 246, 271, 274, 277, 576
BccI CCATC 5 cut(s) 110, 134, 146, 296, 419
BceAI ACGGC 2 cut(s) 346, 446
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 314, 486
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 272, 459
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 91, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 275, 400
BseDI CCNNGG 2 cut(s) 91, 182
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 535
BseNI ACTGG 2 cut(s) 275, 400
BseXI GCAGC 6 cut(s) 46, 246, 271, 274, 277, 576
Bsh1236I CGCG 3 cut(s) 225, 281, 421
Bsh1285I CGRYCG 1 cut(s) 472
BshFI GGCC 3 cut(s) 33, 274, 461
BshNI GGYRCC 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 3 cut(s) 33, 274, 461
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 257, 479
Bsp143I GATC 2 cut(s) 178, 469
BspACI CCGC 6 cut(s) 281, 306, 410, 413, 416, 421
BspANI GGCC 3 cut(s) 33, 274, 461
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 3 cut(s) 225, 281, 421
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 501
BsrI ACTGG 2 cut(s) 275, 400
BssECI CCNNGG 2 cut(s) 91, 182
BssMI GATC 2 cut(s) 178, 469
BssT1I CCWWGG 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 3 cut(s) 225, 281, 421
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 3 cut(s) 59, 335, 421
BstKTI GATC 2 cut(s) 181, 472
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 178, 469
BstMCI CGRYCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 5 cut(s) 39, 231, 287, 290, 416
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 3 cut(s) 225, 281, 421
BstV1I GCAGC 6 cut(s) 46, 246, 271, 274, 277, 576
BsuRI GGCC 3 cut(s) 33, 274, 461
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 407
BveI ACCTGC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 567
CfoI GCGC 3 cut(s) 59, 335, 421
Cfr13I GGNCC 2 cut(s) 272, 459
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 39
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 180, 471
DpnII GATC 2 cut(s) 178, 469
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 257, 479
Eco31I GGTCTC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 257, 479
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 42
FaiI YATR 4 cut(s) 40, 162, 441, 552
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 414
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 2 cut(s) 257, 479
FspBI CTAG 2 cut(s) 314, 486
GlaI GCGC 3 cut(s) 58, 334, 420
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 3 cut(s) 33, 274, 461
HapII CCGG 1 cut(s) 30
HhaI GCGC 3 cut(s) 59, 335, 421
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 3 cut(s) 57, 333, 419
HinP1I GCGC 3 cut(s) 57, 333, 419
HinfI GANTC 3 cut(s) 96, 133, 340
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 161, 334, 442
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 2 cut(s) 339, 474
Hpy188III TCNNGA 2 cut(s) 137, 523
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 34, 95, 319
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 62, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 231, 287, 290, 416
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 3 cut(s) 57, 333, 419
KpnI GGTACC 1 cut(s) 400
Kzo9I GATC 2 cut(s) 178, 469
LmnI GCTCC 1 cut(s) 474
LpnPI CCDG 8 cut(s) 43, 47, 48, 270, 288, 413, 508, 542
Lsp1109I GCAGC 6 cut(s) 46, 246, 271, 274, 277, 576
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 314, 486
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 448, 569
MalI GATC 2 cut(s) 180, 471
MboI GATC 2 cut(s) 178, 469
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 257, 479
MluCI AATT 2 cut(s) 174, 535
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 7 cut(s) 113, 149, 186, 192, 223, 263, 422
MseI TTAA 2 cut(s) 50, 228
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 174
MvnI CGCG 3 cut(s) 225, 281, 421
MwoI GCNNNNNNNGC 5 cut(s) 39, 231, 287, 290, 416
NdeII GATC 2 cut(s) 178, 469
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 2 cut(s) 448, 569
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PfeI GAWTC 2 cut(s) 133, 340
Ple19I CGATCG 1 cut(s) 472
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 272, 459
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 567
PvuI CGATCG 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SacI GAGCTC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 50, 228
Sau3AI GATC 2 cut(s) 178, 469
Sau96I GGNCC 2 cut(s) 272, 459
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 2 cut(s) 257, 479
SetI ASST 9 cut(s) 56, 67, 160, 191, 197, 248, 433, 479, 569
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 174, 535
SsiI CCGC 6 cut(s) 281, 306, 410, 413, 416, 421
SspMI CTAG 2 cut(s) 314, 486
SstI GAGCTC 1 cut(s) 479
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 268, 468
TasI AATT 2 cut(s) 174, 535
TauI GCSGC 5 cut(s) 284, 309, 413, 416, 419
TfiI GAWTC 2 cut(s) 133, 340
Tru1I TTAA 2 cut(s) 50, 228
Tru9I TTAA 2 cut(s) 50, 228
TscAI CASTG 1 cut(s) 407
TseFI GTSAC 2 cut(s) 448, 569
TseI GCWGC 6 cut(s) 59, 234, 284, 287, 290, 564
Tsp45I GTSAC 2 cut(s) 448, 569
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 407
XapI RAATTY 1 cut(s) 535
XspI CTAG 2 cut(s) 314, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.