RLG00000006868

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000535
Physical Location & Seq
Forward (+)
11289594 .. 11291350
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006868

Sequence Viewer

Length: 1008 bp
ATGTGGCAGCAACGAACACAGCGGCTCCGACCGACTTCCAAATCCAGGGCATGTCTGTTTGGGTCCTTTTGTATCGTTCGATCCATCCAATTAGATCAGGGAGACGACCTGAATCCAAGTCGAGATGGTGGCCAGATTCACTGTGCGACTGGTGTGATGGTTCCCGACGAGGCTGAGATGGAGGTGACGCCGCTTCTGGCACTGCCTTGCAATGTTGTTCGGGGTCAAAGTCTCAATGGATCGAACTTGGAACAACTTTGGACATTATTGCTTATAGTGCTTGGGGCAATTGGAGGTGCACTGCAAGTGTTAGAATGCAACAGCACTAGTGGGGCTGCAACTAAGTTGAGGATGACGTCGGTGACCAGCGGCGCTGCTAGGCTAACTATCAGTGGTTGGCTTTCAAAGGCTTGGGTGTCCAATGTTATGTCAAAATGGGCTTTTGTTTGGGCCCAGGGTTTTATCGTTGGCCTCTCGTCTTCGACAAATTTCCCAACTATAGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTGCCGTGTTCTAGGGCGCGCTGCTGAATGCTATTCTTTGTTTTTCCTCCTCCTTATGCTCAATGTTTGCGGCTTTGCTGGGGGACTATTAGATCCGGTTTTGGATCGGACTTTGGATCCTTATGTGTTGGGTGAAGGAGGCACTGATAATAGCATAATCGATCCTTGGAGGTGGAGAGGGTTTCTGGGTGCGGAGACTCTGATGCGTCTCGACGGATTCCATTCGGGGCGTTTTGGTCTTGTTGGTTTTGGAGATGAGGGTACAAATCTGGTAATGGTGAAGGATTGTGATCTAGCTCGATTTGCTTTCTTTGATAATGCTCGTTGCTGGGGTGGGAATCAGCCTGGTCGTGGTGGTCTAGCAGTGGCTTTATGTAGAAGCTTTGCGGCGACGTGGCAAGTCGGAGGTGGTGGTGGTCTGGAAGCTAGGGTGTCATCATCAATTGGCGCCATCTGGGCCGTGTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

35.77

Weight (kDa)

7.47

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 983
AccII CGCG 1 cut(s) 555
AciI CCGC 6 cut(s) 22, 191, 369, 606, 728, 923
AclWI GGATC 7 cut(s) 75, 247, 623, 647, 648, 660, 692
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 3 cut(s) 188, 356, 984
AfaI GTAC 1 cut(s) 799
AfiI CCNNNNNNNGG 2 cut(s) 45, 887
AgsI TTSAA 1 cut(s) 405
AhlI ACTAGT 1 cut(s) 326
AjiI CACGTC 1 cut(s) 930
AjnI CCWGG 3 cut(s) 44, 453, 880
AluBI AGCT 4 cut(s) 503, 833, 918, 962
AluI AGCT 4 cut(s) 503, 833, 918, 962
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 4 cut(s) 96, 236, 725, 749
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 7 cut(s) 75, 247, 623, 647, 648, 660, 692
AoxI GGCC 4 cut(s) 130, 450, 469, 993
ApaI GGGCCC 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 297
ApeKI GCWGC 4 cut(s) 7, 335, 374, 557
ApoI RAATTY 1 cut(s) 487
AspLEI GCGC 4 cut(s) 374, 555, 557, 986
AspS9I GGNCC 4 cut(s) 63, 450, 451, 993
AsuHPI GGTGA 4 cut(s) 196, 373, 680, 826
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 2 cut(s) 301, 454
BalI TGGCCA 1 cut(s) 132
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 983
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 4 cut(s) 19, 322, 361, 544
BccI CCATC 5 cut(s) 92, 119, 151, 172, 995
BceAI ACGGC 2 cut(s) 525, 980
BciT130I CCWGG 3 cut(s) 46, 455, 882
BcoDI GTCTC 4 cut(s) 96, 236, 725, 749
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 7 cut(s) 327, 378, 548, 830, 896, 963, 1006
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 2 cut(s) 375, 987
BglI GCCNNNNNGGC 1 cut(s) 992
BisI GCNGC 9 cut(s) 8, 23, 191, 336, 370, 375, 558, 607, 924
BlsI GCNGC 9 cut(s) 9, 24, 192, 337, 371, 376, 559, 608, 925
Bme1390I CCNGG 3 cut(s) 46, 455, 882
Bme18I GGWCC 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 930
BmgT120I GGNCC 4 cut(s) 63, 450, 451, 993
BmiI GGNNCC 6 cut(s) 26, 64, 162, 452, 654, 985
BmrFI CCNGG 3 cut(s) 46, 455, 882
BmsI GCATC 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 3 cut(s) 188, 356, 984
BsaJI CCNNGG 4 cut(s) 45, 453, 454, 701
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 887
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 3 cut(s) 46, 455, 882
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 4 cut(s) 45, 453, 454, 701
BseGI GGATG 2 cut(s) 84, 357
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 2 cut(s) 45, 887
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 154
BsePI GCGCGC 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 575
BseSI GKGCMC 2 cut(s) 301, 454
BseXI GCAGC 4 cut(s) 19, 322, 361, 544
BseYI CCCAGC 2 cut(s) 614, 864
Bsh1236I CGCG 1 cut(s) 555
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 132, 452, 471, 995
BshNI GGYRCC 1 cut(s) 983
BshVI ATCGAT 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 45, 887
BsmAI GTCTC 4 cut(s) 96, 236, 725, 749
BsmBI CGTCTC 2 cut(s) 96, 749
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 2 cut(s) 320, 569
BsnI GGCC 4 cut(s) 132, 452, 471, 995
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 301, 454
Bsp143I GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
BspACI CCGC 6 cut(s) 22, 191, 369, 606, 728, 923
BspANI GGCC 4 cut(s) 132, 452, 471, 995
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 696
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 6 cut(s) 26, 64, 162, 452, 654, 985
BspPI GGATC 7 cut(s) 75, 247, 623, 647, 648, 660, 692
BspT107I GGYRCC 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 4 cut(s) 45, 453, 454, 701
BssHII GCGCGC 1 cut(s) 553
BssMI GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
BssNI GRCGYC 3 cut(s) 188, 356, 984
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 46, 455, 882
Bst4CI ACNGT 1 cut(s) 143
BstACI GRCGYC 3 cut(s) 188, 356, 984
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 174, 342
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 2 cut(s) 84, 357
BstFNI CGCG 1 cut(s) 555
BstH2I RGCGCY 2 cut(s) 375, 987
BstHHI GCGC 4 cut(s) 374, 555, 557, 986
BstKTI GATC 8 cut(s) 83, 97, 242, 631, 643, 655, 700, 829
BstMAI GTCTC 4 cut(s) 96, 236, 725, 749
BstMBI GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 277, 537, 839, 992
BstNI CCWGG 3 cut(s) 46, 455, 882
BstNSI RCATGY 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 3 cut(s) 44, 453, 880
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 2 cut(s) 301, 454
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 19, 322, 361, 544
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 628, 652
BstYI RGATCY 2 cut(s) 628, 652
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 4 cut(s) 132, 452, 471, 995
BsuTUI ATCGAT 1 cut(s) 696
BtrI CACGTC 1 cut(s) 930
BtsCI GGATG 2 cut(s) 84, 357
BtsI GCAGTG 3 cut(s) 200, 299, 906
BtsIMutI CAGTG 6 cut(s) 139, 200, 299, 397, 678, 906
Cac8I GCNNGC 1 cut(s) 555
CfoI GCGC 4 cut(s) 374, 555, 557, 986
Cfr13I GGNCC 4 cut(s) 63, 450, 451, 993
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 2 cut(s) 196, 731
Csp6I GTAC 1 cut(s) 798
CviAII CATG 1 cut(s) 51
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 2 cut(s) 174, 342
DinI GGCGCC 1 cut(s) 985
DpnI GATC 8 cut(s) 82, 96, 241, 630, 642, 654, 699, 828
DpnII GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
EaeI YGGCCR 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 44, 453, 880
EcoT14I CCWWGG 1 cut(s) 701
EcoT38I GRGCYC 1 cut(s) 454
EgeI GGCGCC 1 cut(s) 985
EheI GGCGCC 1 cut(s) 985
ErhI CCWWGG 1 cut(s) 701
Esp3I CGTCTC 2 cut(s) 96, 749
FaeI CATG 1 cut(s) 54
FaiI YATR 8 cut(s) 52, 275, 428, 500, 593, 660, 692, 910
FaqI GGGAC 1 cut(s) 633
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 9 cut(s) 8, 23, 191, 336, 370, 375, 558, 607, 924
FokI GGATG 2 cut(s) 71, 364
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 9 cut(s) 8, 23, 191, 336, 370, 375, 558, 607, 924
FspBI CTAG 7 cut(s) 327, 378, 548, 830, 896, 963, 1006
GlaI GCGC 4 cut(s) 373, 554, 556, 985
GluI GCNGC 9 cut(s) 8, 23, 191, 336, 370, 375, 558, 607, 924
GsaI CCCAGC 2 cut(s) 618, 868
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 2 cut(s) 375, 987
HaeIII GGCC 4 cut(s) 132, 452, 471, 995
HapII CCGG 1 cut(s) 632
HgaI GACGC 2 cut(s) 196, 731
HhaI GCGC 4 cut(s) 374, 555, 557, 986
Hin1I GRCGYC 3 cut(s) 188, 356, 984
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 4 cut(s) 372, 553, 555, 984
HinP1I GCGC 4 cut(s) 372, 553, 555, 984
HindIII AAGCTT 1 cut(s) 916
HinfI GANTC 5 cut(s) 112, 136, 733, 753, 874
HpaII CCGG 1 cut(s) 632
HphI GGTGA 4 cut(s) 196, 373, 680, 826
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 4 cut(s) 29, 645, 738, 941
Hpy188III TCNNGA 4 cut(s) 122, 164, 746, 956
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 4 cut(s) 170, 361, 752, 931
HpyAV CCTTC 3 cut(s) 531, 665, 811
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 356, 929
HpyCH4V TGCA 5 cut(s) 210, 299, 304, 318, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 277, 537, 839, 992
HpyF3I CTNAG 2 cut(s) 174, 342
HpySE526I ACGT 2 cut(s) 356, 929
Hsp92I GRCGYC 3 cut(s) 188, 356, 984
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 4 cut(s) 372, 553, 555, 984
KasI GGCGCC 1 cut(s) 983
Kzo9I GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 4 cut(s) 19, 322, 361, 544
LweI GCATC 1 cut(s) 729
MaeI CTAG 7 cut(s) 327, 378, 548, 830, 896, 963, 1006
MaeII ACGT 2 cut(s) 356, 929
MaeIII GTNAC 2 cut(s) 184, 361
MalI GATC 8 cut(s) 82, 96, 241, 630, 642, 654, 699, 828
MboI GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
MboII GAAGA 1 cut(s) 471
MfeI CAATTG 2 cut(s) 288, 978
MflI RGATCY 2 cut(s) 628, 652
MhlI GDGCHC 2 cut(s) 301, 454
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 5 cut(s) 89, 288, 487, 513, 978
MluNI TGGCCA 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 984
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 2 cut(s) 52, 919
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 2 cut(s) 22, 369
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 3 cut(s) 46, 455, 882
MunI CAATTG 2 cut(s) 288, 978
Mva1269I GAATGC 2 cut(s) 320, 569
MvaI CCWGG 3 cut(s) 46, 455, 882
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 277, 537, 839, 992
NarI GGCGCC 1 cut(s) 984
NdeII GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 6 cut(s) 26, 64, 162, 452, 654, 985
NmuCI GTSAC 2 cut(s) 184, 361
NspI RCATGY 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 454
PauI GCGCGC 1 cut(s) 553
PctI GAATGC 2 cut(s) 320, 569
PfeI GAWTC 4 cut(s) 112, 136, 753, 874
PkrI GCNGC 9 cut(s) 9, 24, 192, 337, 371, 376, 559, 608, 925
PleI GAGTC 1 cut(s) 727
PluTI GGCGCC 1 cut(s) 987
PpsI GAGTC 1 cut(s) 727
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 44, 453, 880
PspEI GGTNACC 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 614, 864
PspGI CCWGG 3 cut(s) 44, 453, 880
PspN4I GGNNCC 6 cut(s) 26, 64, 162, 452, 654, 985
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 4 cut(s) 63, 450, 451, 993
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 2 cut(s) 628, 652
PteI GCGCGC 1 cut(s) 553
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
SatI GCNGC 9 cut(s) 8, 23, 191, 336, 370, 375, 558, 607, 924
Sau3AI GATC 8 cut(s) 80, 94, 239, 628, 640, 652, 697, 826
Sau96I GGNCC 4 cut(s) 63, 450, 451, 993
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 3 cut(s) 46, 455, 882
SduI GDGCHC 2 cut(s) 301, 454
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 1 cut(s) 498
SfoI GGCGCC 1 cut(s) 985
SinI GGWCC 1 cut(s) 63
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 5 cut(s) 89, 288, 487, 513, 978
SsiI CCGC 6 cut(s) 22, 191, 369, 606, 728, 923
SspDI GGCGCC 1 cut(s) 983
SspMI CTAG 7 cut(s) 327, 378, 548, 830, 896, 963, 1006
StyD4I CCNGG 3 cut(s) 44, 453, 880
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 359, 932
TaqI TCGA 7 cut(s) 79, 121, 242, 482, 696, 747, 835
TaqII GACCGA 1 cut(s) 46
TasI AATT 5 cut(s) 89, 288, 487, 513, 978
TauI GCSGC 5 cut(s) 25, 193, 372, 609, 926
TfiI GAWTC 4 cut(s) 112, 136, 753, 874
TscAI CASTG 6 cut(s) 146, 207, 306, 397, 685, 906
TseFI GTSAC 2 cut(s) 184, 361
TseI GCWGC 4 cut(s) 7, 335, 374, 557
Tsp45I GTSAC 2 cut(s) 184, 361
TspGWI ACGGA 1 cut(s) 765
TspRI CASTG 6 cut(s) 146, 207, 306, 397, 685, 906
VneI GTGCAC 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 54
XspI CTAG 7 cut(s) 327, 378, 548, 830, 896, 963, 1006
ZraI GACGTC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.