Rroxscaffold_2G00153650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000535
Physical Location & Seq
Reverse (-)
90426628 .. 90427690
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153650.1

Sequence Viewer

Length: 618 bp
ATGGTTCCCTACGAGGCTGCGATGGAGGTGACGCCGCTTCTGGCACTGCCTTGCAATGTTGTTCGGCGACAAAATCTCAATGGATCAAACTTGGAACAACTTTGGGCATTATTGCTTCTGTTTGCAATTGTCTCTGAACTGATGGCAATACCCATGCTATGGCCTGAATCTCGACGGCTCGATTCTCGCCTGGATGATCGTATCTCTGGGCTGGGCACATCGGGTTTTATACGGAATAGAGTACTTGGAGCAATTGGAGGTGCACTGCAAGTGCTATGCAGCAGCGCTAGTGGGGCTGCAACTAAGTTGAGGATGACGGCGGTGACCGGCGGTGCTGTTAGGCTGACTATCAGTGGTCGGCTTTCAAAGGCTTGGGTGCCCATACTAACTGGGGTGTCCAATGTTATGTCAAAATGGGCTTTTGTTTGGGCCCAGGTTAGTTCTTCCAGATCAAAAGGGGTTGTCAAATTGTTGGGCTGCTTTCTGACCCACTTCATATTGGGGCGGACCTCTCCTTCGGAGCCTAAACCAAAGAAAGTTGGTGCAGAAGAAGTTCTATGGCTGACCTACATAGCCAAATCTTCTAGCCCAAGATTGAAGGGCGAGCAAGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.18

Weight (kDa)

10.15

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 4 cut(s) 35, 320, 330, 505
AclWI GGATC 1 cut(s) 91
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 2 cut(s) 366, 598
AjnI CCWGG 2 cut(s) 189, 432
AluBI AGCT 1 cut(s) 615
AluI AGCT 1 cut(s) 615
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 136
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 286
AoxI GGCC 2 cut(s) 161, 429
ApaI GGGCCC 1 cut(s) 433
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 5 cut(s) 17, 279, 282, 296, 477
ArsI GACNNNNNNTTYG 2 cut(s) 499, 531
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 429, 430, 507
AsuHPI GGTGA 2 cut(s) 40, 334
AvaII GGWCC 1 cut(s) 507
BaeGI GKGCMC 4 cut(s) 218, 265, 381, 433
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 5 cut(s) 4, 283, 291, 294, 464
BccI CCATC 2 cut(s) 16, 136
BceAI ACGGC 2 cut(s) 191, 333
BciT130I CCWGG 2 cut(s) 191, 434
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 3 cut(s) 288, 585, 616
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 6 cut(s) 18, 35, 280, 283, 297, 478
BlsI GCNGC 6 cut(s) 19, 36, 281, 284, 298, 479
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 2 cut(s) 191, 434
Bme18I GGWCC 1 cut(s) 507
BmgT120I GGNCC 3 cut(s) 429, 430, 507
BmiI GGNNCC 4 cut(s) 6, 378, 431, 522
BmrFI CCNGG 2 cut(s) 191, 434
BmrI ACTGGG 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 191, 434
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 199, 318
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 394
BseSI GKGCMC 4 cut(s) 218, 265, 381, 433
BseXI GCAGC 5 cut(s) 4, 283, 291, 294, 464
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 2 cut(s) 163, 431
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 2 cut(s) 163, 431
Bsp120I GGGCCC 1 cut(s) 429
Bsp1286I GDGCHC 4 cut(s) 218, 265, 381, 433
Bsp143I GATC 3 cut(s) 83, 196, 449
BspACI CCGC 4 cut(s) 35, 320, 330, 505
BspANI GGCC 2 cut(s) 163, 431
BspLI GGNNCC 4 cut(s) 6, 378, 431, 522
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 3 cut(s) 83, 196, 449
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 191, 434
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 2 cut(s) 199, 318
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 86, 199, 452
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 83, 196, 449
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 2 cut(s) 191, 434
BstPI GGTNACC 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 189, 432
BstSLI GKGCMC 4 cut(s) 218, 265, 381, 433
BstV1I GCAGC 5 cut(s) 4, 283, 291, 294, 464
BsuRI GGCC 2 cut(s) 163, 431
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 199, 318
BtsI GCAGTG 2 cut(s) 44, 263
BtsIMutI CAGTG 3 cut(s) 44, 263, 358
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 429, 430, 507
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 154
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 303
DpnI GATC 3 cut(s) 85, 198, 451
DpnII GATC 3 cut(s) 83, 196, 449
EciI GGCGGA 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 507
Eco47III AGCGCT 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 189, 432
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 1 cut(s) 157
FaiI YATR 9 cut(s) 155, 160, 230, 277, 383, 407, 497, 559, 572
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 18, 35, 280, 283, 297, 478
FokI GGATG 2 cut(s) 206, 325
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 6 cut(s) 18, 35, 280, 283, 297, 478
FspBI CTAG 3 cut(s) 288, 585, 616
GlaI GCGC 1 cut(s) 286
GluI GCNGC 6 cut(s) 18, 35, 280, 283, 297, 478
GsaI CCCAGC 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 2 cut(s) 163, 431
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 167, 182
HpaII CCGG 1 cut(s) 327
HphI GGTGA 2 cut(s) 40, 334
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 136, 486, 520
Hpy188III TCNNGA 2 cut(s) 171, 447
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 525, 592
HpyCH4V TGCA 7 cut(s) 54, 125, 263, 268, 279, 299, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 83, 196, 449
LmnI GCTCC 2 cut(s) 248, 520
Lsp1109I GCAGC 5 cut(s) 4, 283, 291, 294, 464
MaeI CTAG 3 cut(s) 288, 585, 616
MaeIII GTNAC 2 cut(s) 28, 322
MalI GATC 3 cut(s) 85, 198, 451
MboI GATC 3 cut(s) 83, 196, 449
MboII GAAGA 3 cut(s) 435, 560, 573
MfeI CAATTG 2 cut(s) 126, 252
MhlI GDGCHC 4 cut(s) 218, 265, 381, 433
MluCI AATT 3 cut(s) 126, 252, 467
MnlI CCTC 5 cut(s) 7, 19, 251, 303, 520
MroXI GAANNNNTTC 1 cut(s) 552
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 191, 434
MunI CAATTG 2 cut(s) 126, 252
MvaI CCWGG 2 cut(s) 191, 434
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 3 cut(s) 83, 196, 449
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 4 cut(s) 6, 378, 431, 522
NmuCI GTSAC 2 cut(s) 28, 322
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 167, 182
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 6 cut(s) 19, 36, 281, 284, 298, 479
Psp6I CCWGG 2 cut(s) 189, 432
PspEI GGTNACC 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 2 cut(s) 189, 432
PspN4I GGNNCC 4 cut(s) 6, 378, 431, 522
PspOMI GGGCCC 1 cut(s) 429
PspPI GGNCC 3 cut(s) 429, 430, 507
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SatI GCNGC 6 cut(s) 18, 35, 280, 283, 297, 478
Sau3AI GATC 3 cut(s) 83, 196, 449
Sau96I GGNCC 3 cut(s) 429, 430, 507
ScaI AGTACT 1 cut(s) 243
ScrFI CCNGG 2 cut(s) 191, 434
SduI GDGCHC 4 cut(s) 218, 265, 381, 433
SetI ASST 6 cut(s) 30, 262, 438, 512, 569, 617
SinI GGWCC 1 cut(s) 507
Sse9I AATT 3 cut(s) 126, 252, 467
SsiI CCGC 4 cut(s) 35, 320, 330, 505
SspMI CTAG 3 cut(s) 288, 585, 616
StyD4I CCNGG 2 cut(s) 189, 432
TaqI TCGA 2 cut(s) 172, 180
TasI AATT 3 cut(s) 126, 252, 467
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 167, 182
TscAI CASTG 3 cut(s) 51, 270, 358
TseFI GTSAC 2 cut(s) 28, 322
TseI GCWGC 5 cut(s) 17, 279, 282, 296, 477
Tsp45I GTSAC 2 cut(s) 28, 322
TspDTI ATGAA 1 cut(s) 484
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 3 cut(s) 51, 270, 358
Van91I CCANNNNNTGG 1 cut(s) 159
VneI GTGCAC 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 507
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 3 cut(s) 288, 585, 616
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.