Rh4DG291700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000535
Physical Location & Seq
Reverse (-)
51262355 .. 51263390
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG291700.1

Sequence Viewer

Length: 393 bp
ATGGTGCGTGATCTGGCTGCTGATGCTGGTATCGTGGATACGCTGGGTATTGATGATGTGGTTGATCTGGGCTTTGACCGGATCTTCTCTGGTGGAGATGTATGCTGGCGATTGTGGGAGCCAGGTATACCTAACGCCACCCTCTGGCTTACAGAGGCGAAGTTTGAGGCTTGGGTACTGGATCGGGCTTCCGCTGTTGGAGGCGGCAATCTGATGTTGGTGAAGGATGGCGGTCTGGTTTCGCCTGGGAGTGATCTGTGTCGGCTTGGTAGTGGTGGCATGTTGGTGGAAACGGCAGCGGCTCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCGGCGGTAAATCGGAGCTCTAACCCTAGCGGTGGGAGCTCAGCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.23

Weight (kDa)

4.39

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 127
AciI CCGC 7 cut(s) 192, 204, 231, 299, 344, 347, 372
AclWI GGATC 2 cut(s) 89, 189
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 144, 343, 374
AjnI CCWGG 2 cut(s) 121, 244
AluBI AGCT 3 cut(s) 360, 381, 386
AluI AGCT 3 cut(s) 360, 381, 386
Alw21I GWGCWC 2 cut(s) 362, 383
AlwI GGATC 2 cut(s) 89, 189
Ama87I CYCGRG 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 17, 296
AsuHPI GGTGA 2 cut(s) 232, 325
AvaI CYCGRG 1 cut(s) 303
BanII GRGCYC 2 cut(s) 362, 383
Bbv12I GWGCWC 2 cut(s) 362, 383
BbvI GCAGC 2 cut(s) 4, 308
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 2 cut(s) 123, 246
BciVI GTATCC 1 cut(s) 31
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 317
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 5 cut(s) 18, 205, 297, 300, 345
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 5 cut(s) 19, 206, 298, 301, 346
Bme1390I CCNGG 2 cut(s) 123, 246
BmeT110I CYCGRG 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 123, 246
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 343, 374
Bse1I ACTGG 2 cut(s) 183, 344
BseBI CCWGG 2 cut(s) 123, 246
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 144, 343, 374
BseNI ACTGG 2 cut(s) 183, 344
BseXI GCAGC 2 cut(s) 4, 308
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 362, 383
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 144, 343, 374
BsmFI GGGAC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 362, 383
Bsp143I GATC 5 cut(s) 10, 64, 81, 181, 253
Bsp1720I GCTNAGC 1 cut(s) 382
BspACI CCGC 7 cut(s) 192, 204, 231, 299, 344, 347, 372
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 89, 189
BsrI ACTGG 2 cut(s) 183, 344
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 5 cut(s) 10, 64, 81, 181, 253
BssNAI GTATAC 1 cut(s) 128
Bst1107I GTATAC 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 123, 246
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 5 cut(s) 13, 67, 84, 184, 256
BstMBI GATC 5 cut(s) 10, 64, 81, 181, 253
BstMWI GCNNNNNNNGC 2 cut(s) 23, 378
BstNI CCWGG 2 cut(s) 123, 246
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 121, 244
BstV1I GCAGC 2 cut(s) 4, 308
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 128
BsuI GTATCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 280
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 382
DpnI GATC 5 cut(s) 12, 66, 83, 183, 255
DpnII GATC 5 cut(s) 10, 64, 81, 181, 253
Ecl136II GAGCTC 2 cut(s) 360, 381
Eco24I GRGCYC 2 cut(s) 362, 383
Eco53kI GAGCTC 2 cut(s) 360, 381
Eco88I CYCGRG 1 cut(s) 303
EcoICRI GAGCTC 2 cut(s) 360, 381
EcoRII CCWGG 2 cut(s) 121, 244
EcoT38I GRGCYC 2 cut(s) 362, 383
FaeI CATG 1 cut(s) 283
FaiI YATR 3 cut(s) 103, 128, 281
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 5 cut(s) 18, 205, 297, 300, 345
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 362, 383
Fsp4HI GCNGC 5 cut(s) 18, 205, 297, 300, 345
FspBI CTAG 1 cut(s) 369
GluI GCNGC 5 cut(s) 18, 205, 297, 300, 345
GsaI CCCAGC 1 cut(s) 47
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 283
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 232, 325
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 213, 357
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 378
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 5 cut(s) 10, 64, 81, 181, 253
LmnI GCTCC 3 cut(s) 118, 357, 378
Lsp1109I GCAGC 2 cut(s) 4, 308
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 12, 66, 83, 183, 255
MboI GATC 5 cut(s) 10, 64, 81, 181, 253
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 362, 383
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 5 cut(s) 148, 152, 160, 194, 305
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 194, 299
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 123, 246
MvaI CCWGG 2 cut(s) 123, 246
MwoI GCNNNNNNNGC 2 cut(s) 23, 378
NdeII GATC 5 cut(s) 10, 64, 81, 181, 253
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 5 cut(s) 19, 206, 298, 301, 346
Psp124BI GAGCTC 2 cut(s) 362, 383
Psp6I CCWGG 2 cut(s) 121, 244
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 121, 244
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 2 cut(s) 362, 383
SatI GCNGC 5 cut(s) 18, 205, 297, 300, 345
Sau3AI GATC 5 cut(s) 10, 64, 81, 181, 253
ScrFI CCNGG 2 cut(s) 123, 246
SduI GDGCHC 2 cut(s) 362, 383
SetI ASST 7 cut(s) 127, 133, 316, 331, 362, 383, 388
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 284
SsiI CCGC 7 cut(s) 192, 204, 231, 299, 344, 347, 372
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 2 cut(s) 362, 383
StyD4I CCNGG 2 cut(s) 121, 244
TauI GCSGC 3 cut(s) 207, 302, 347
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 17, 296
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 144
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.