RLG00000019628

AKAP7 2'5' RNA ligase-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000535
Physical Location & Seq
Reverse (-)
54505125 .. 54506039
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019628

Sequence Viewer

Length: 333 bp
ATGCCATCGCCTGCACTGGCAAGTTCTCTCCGCTCGTCGATTGCTGCATGGATCTTCGATCAGAGTTTCCCAAGCAGCCCAGAGGCTCCAGCTTACTCTTATGGAGAATGCTCAGTAGTGGAGTTTTCGGATAAGCTGAAGAAGTGCACTTTTGCTTATCTACCAAGATTAATTTCAAGTGCTCAAAATGACATAGAGGTGGCTTTAGCAGTTACTGAGGCAACCAAGTTCACTACTTGTTCAAGTGCATTGCAACGTAATAAAGAGGATAAAGTTTTAGGTGGAGAAACAGTGCTTTTAACCGAAAAGCATTCAATTTCAGTCGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

5.07

Isoelectric Point (pI)

72.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 177, 243, 315
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 2 cut(s) 92, 136
AluI AGCT 2 cut(s) 92, 136
Alw21I GWGCWC 2 cut(s) 149, 184
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 215
ApaLI GTGCAC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 44, 75
AseI ATTAAT 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 149, 184
BbvI GCAGC 2 cut(s) 31, 87
BccI CCATC 1 cut(s) 13
BisI GCNGC 2 cut(s) 45, 76
BlsI GCNGC 2 cut(s) 46, 77
BmiI GGNNCC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 126, 207
BseNI ACTGG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 31, 87
BsiHKAI GWGCWC 2 cut(s) 149, 184
BsmI GAATGC 2 cut(s) 113, 310
Bsp1286I GDGCHC 2 cut(s) 149, 184
Bsp143I GATC 2 cut(s) 51, 58
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 125, 208
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 21
BssMI GATC 2 cut(s) 51, 58
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 112, 216
BstKTI GATC 2 cut(s) 54, 61
BstMBI GATC 2 cut(s) 51, 58
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 31, 87
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 14, 297
Cac8I GCNNGC 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 215
CviAII CATG 2 cut(s) 48, 330
CviJI RGCY 5 cut(s) 78, 86, 92, 136, 203
CviKI_1 RGCY 5 cut(s) 78, 86, 92, 136, 203
DdeI CTNAG 2 cut(s) 112, 216
DpnI GATC 2 cut(s) 53, 60
DpnII GATC 2 cut(s) 51, 58
Eco57I CTGAAG 1 cut(s) 158
FaeI CATG 2 cut(s) 51, 333
FaiI YATR 4 cut(s) 49, 102, 194, 331
FatI CATG 2 cut(s) 47, 329
Fnu4HI GCNGC 2 cut(s) 45, 76
Fsp4HI GCNGC 2 cut(s) 45, 76
GluI GCNGC 2 cut(s) 45, 76
GsuI CTGGAG 1 cut(s) 72
Hin1II CATG 2 cut(s) 51, 333
Hpy166II GTNNAC 2 cut(s) 147, 231
Hpy188I TCNGA 2 cut(s) 63, 130
Hpy8I GTNNAC 2 cut(s) 147, 231
Hpy99I CGWCG 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 14, 47, 147, 248, 253
HpyF3I CTNAG 2 cut(s) 112, 216
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 2 cut(s) 51, 333
Kzo9I GATC 2 cut(s) 51, 58
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 2, 24, 93, 102
Lsp1109I GCAGC 2 cut(s) 31, 87
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 53, 60
MbiI CCGCTC 1 cut(s) 33
MboI GATC 2 cut(s) 51, 58
MboII GAAGA 2 cut(s) 46, 151
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 149, 184
MluCI AATT 2 cut(s) 171, 315
MnlI CCTC 5 cut(s) 76, 190, 211, 259, 319
MseI TTAA 2 cut(s) 170, 299
MslI CAYNNNNRTG 1 cut(s) 197
Mva1269I GAATGC 2 cut(s) 113, 310
NdeII GATC 2 cut(s) 51, 58
NlaIII CATG 2 cut(s) 51, 333
NlaIV GGNNCC 1 cut(s) 87
PctI GAATGC 2 cut(s) 113, 310
PkrI GCNGC 2 cut(s) 46, 77
PshBI ATTAAT 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 2 cut(s) 170, 299
SatI GCNGC 2 cut(s) 45, 76
Sau3AI GATC 2 cut(s) 51, 58
SduI GDGCHC 2 cut(s) 149, 184
SetI ASST 5 cut(s) 94, 138, 201, 259, 283
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 2 cut(s) 171, 315
SsiI CCGC 1 cut(s) 31
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 38, 57, 324
TasI AATT 2 cut(s) 171, 315
Tru1I TTAA 2 cut(s) 170, 299
Tru9I TTAA 2 cut(s) 170, 299
TscAI CASTG 2 cut(s) 21, 297
TseI GCWGC 2 cut(s) 44, 75
TspRI CASTG 2 cut(s) 21, 297
VneI GTGCAC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.