Rh3CG194700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000535
Physical Location & Seq
Forward (+)
17312056 .. 17312505
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG194700.1

Sequence Viewer

Length: 450 bp
ATGGCTCTTGCCACAATTGACCCTTCCTCCGGTGTGTCTTATGTTGTTCTGGGGCGGGCTGTTGCATGTTATTCTTTGCTTTTCCTCCTTTTTCCGCTCGGTGTTTGCAGCTTTGGTGGAGGACTTTTAGATGCGGGTTTGGATCTAACTTTGGATCCTTATAAGTTGGGTGAAGGTGGTACTGCGAATAGCGGGATCGATCCTTGGAGGTGGAGAGGGTTTCTTCCCTCTGATGTTCGCGTTGGCGGTGGCGCACAAATTTGGTTGTCGAGTCCAGAACACCGCTGTCAACCAGGAATGTTAGCGGAGAATTTACTGCGGCTCGACGGATTCCATCTGGGGCGTTTTGACCTATTTGATTTTGGAGATGAGGGTAGCGATCTACTGATGGTGAAGGACGGTGGTCTGTCAGCGGTTGCGATGGGAGTCAGCTTGGTCGTGGTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.66

Weight (kDa)

4.51

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 97
AccII CGCG 1 cut(s) 240
AciI CCGC 9 cut(s) 55, 95, 134, 192, 246, 283, 305, 319, 413
AclWI GGATC 5 cut(s) 149, 150, 162, 194, 203
AcsI RAATTY 2 cut(s) 258, 310
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 29
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 111, 432
AluI AGCT 2 cut(s) 111, 432
AlwI GGATC 5 cut(s) 149, 150, 162, 194, 203
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 2 cut(s) 258, 310
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 182, 403
BamHI GGATCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 342, 382, 415
BciT130I CCWGG 1 cut(s) 294
BfaI CTAG 1 cut(s) 448
BisI GCNGC 2 cut(s) 109, 320
BlsI GCNGC 2 cut(s) 110, 321
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 402
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 198
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 446
Bsp143I GATC 5 cut(s) 142, 154, 195, 199, 379
BspACI CCGC 9 cut(s) 55, 95, 134, 192, 246, 283, 305, 319, 413
BspANI GGCC 1 cut(s) 446
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 5 cut(s) 149, 150, 162, 194, 203
BsrBI CCGCTC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 5 cut(s) 142, 154, 195, 199, 379
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 57
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 5 cut(s) 145, 157, 198, 202, 382
BstMBI GATC 5 cut(s) 142, 154, 195, 199, 379
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 69
BstPAI GACNNNNGTC 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 292
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 142, 154
BstYI RGATCY 2 cut(s) 142, 154
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 66
CviJI RGCY 6 cut(s) 5, 59, 111, 322, 432, 446
CviKI_1 RGCY 6 cut(s) 5, 59, 111, 322, 432, 446
CviQI GTAC 1 cut(s) 180
DpnI GATC 5 cut(s) 144, 156, 197, 201, 381
DpnII GATC 5 cut(s) 142, 154, 195, 199, 379
Eco130I CCWWGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 69
FaiI YATR 3 cut(s) 42, 67, 162
FatI CATG 1 cut(s) 65
FauI CCCGC 3 cut(s) 48, 127, 185
Fnu4HI GCNGC 2 cut(s) 109, 320
Fsp4HI GCNGC 2 cut(s) 109, 320
FspBI CTAG 1 cut(s) 448
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 109, 320
HaeIII GGCC 1 cut(s) 446
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 3 cut(s) 271, 330, 426
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 182, 403
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 33, 167, 388
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 65, 108
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 5 cut(s) 142, 154, 195, 199, 379
LpnPI CCDG 6 cut(s) 35, 43, 279, 288, 306, 323
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 448
MalI GATC 5 cut(s) 144, 156, 197, 201, 381
MbiI CCGCTC 1 cut(s) 97
MboI GATC 5 cut(s) 142, 154, 195, 199, 379
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 142, 154
MluCI AATT 3 cut(s) 15, 258, 310
MlyI GAGTC 2 cut(s) 280, 435
MnlI CCTC 7 cut(s) 37, 95, 113, 201, 209, 238, 364
MspA1I CMGCKG 2 cut(s) 285, 413
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 240
NdeII GATC 5 cut(s) 142, 154, 195, 199, 379
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 69
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 110, 321
PleI GAGTC 2 cut(s) 279, 434
PpsI GAGTC 2 cut(s) 279, 434
PshAI GACNNNNGTC 1 cut(s) 402
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 2 cut(s) 142, 154
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SatI GCNGC 2 cut(s) 109, 320
Sau3AI GATC 5 cut(s) 142, 154, 195, 199, 379
SchI GAGTC 2 cut(s) 280, 435
ScrFI CCNGG 1 cut(s) 294
SetI ASST 5 cut(s) 113, 178, 212, 354, 434
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 3 cut(s) 15, 258, 310
SsiI CCGC 9 cut(s) 55, 95, 134, 192, 246, 283, 305, 319, 413
SspMI CTAG 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 3 cut(s) 198, 269, 324
TasI AATT 3 cut(s) 15, 258, 310
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 330
TseI GCWGC 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 342
XapI RAATTY 2 cut(s) 258, 310
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.