Rh7AG105200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000535
Physical Location & Seq
Forward (+)
8295806 .. 8300393
4588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG105200.1

Sequence Viewer

Length: 438 bp
ATGGTTCCCTACGAGGCTGAGATGGAGGTGACGCCACTTCTGGCACTGCCTTGCAATGTTGTTCGGGGTCAAAATCTCAATGGATCAAATTTGGAACAACTTTGGGCATTATTGCTTCTGTTTGAAATTGTCTCTGAACTGATGGCAGTACCCTTGCTATGGCCTGAATCTCGACGGCTCAATTCTTGCCTGGATGATCCTATCTCTGGGTTTGGCACATCGGGTTTTATACGGAGTAGGGTACTTGGGGCAATTGGAGGTGCACTACAAGTGCTATGCAGCAGCGCTAGTGGGGCTGCAACTATGTTGAGGATGACGGCGGTGATCGGCGACGCTGTTAAGCTGACTATCAGTGGTCGGCTTTCAAAGGCTTGGGTGCCCATAGTAACTGGGGTGTCCAATGTTATGTCAAAATGGGATTTTGTTTGGGCCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.61

Weight (kDa)

5.33

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 91, 191
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 150, 243
AfeI AGCGCT 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 159, 206
AgsI TTSAA 2 cut(s) 125, 366
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 136
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 2 cut(s) 91, 191
Aor51HI AGCGCT 1 cut(s) 286
AoxI GGCC 2 cut(s) 161, 429
ApaI GGGCCC 1 cut(s) 433
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 3 cut(s) 279, 282, 296
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 429, 430
AsuHPI GGTGA 2 cut(s) 40, 334
BaeGI GKGCMC 3 cut(s) 265, 381, 433
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 3 cut(s) 283, 291, 294
BccI CCATC 2 cut(s) 16, 136
BceAI ACGGC 2 cut(s) 191, 333
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 3 cut(s) 280, 283, 297
BlsI GCNGC 3 cut(s) 281, 284, 298
Bme1390I CCNGG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 429, 430
BmiI GGNNCC 3 cut(s) 6, 378, 431
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 2 cut(s) 399, 427
BmuI ACTGGG 2 cut(s) 399, 427
BsaHI GRCGYC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 206
Bse1I ACTGG 2 cut(s) 394, 433
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 199, 318
BseLI CCNNNNNNNGG 2 cut(s) 159, 206
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 394, 433
BseSI GKGCMC 3 cut(s) 265, 381, 433
BseXI GCAGC 3 cut(s) 283, 291, 294
BshFI GGCC 2 cut(s) 163, 431
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 159, 206
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 2 cut(s) 163, 431
Bsp120I GGGCCC 1 cut(s) 429
Bsp1286I GDGCHC 3 cut(s) 265, 381, 433
Bsp143I GATC 3 cut(s) 83, 196, 324
BspACI CCGC 1 cut(s) 320
BspANI GGCC 2 cut(s) 163, 431
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 6, 378, 431
BspPI GGATC 2 cut(s) 91, 191
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 394, 433
BssMI GATC 3 cut(s) 83, 196, 324
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 199, 318
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 86, 199, 327
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 83, 196, 324
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 3 cut(s) 265, 381, 433
BstV1I GCAGC 3 cut(s) 283, 291, 294
BsuRI GGCC 2 cut(s) 163, 431
BtsCI GGATG 2 cut(s) 199, 318
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 358
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 429, 430
CseI GACGC 2 cut(s) 40, 341
Csp6I GTAC 2 cut(s) 149, 242
CviJI RGCY 8 cut(s) 17, 163, 178, 296, 343, 361, 371, 431
CviKI_1 RGCY 8 cut(s) 17, 163, 178, 296, 343, 361, 371, 431
CviQI GTAC 2 cut(s) 149, 242
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 85, 198, 326
DpnII GATC 3 cut(s) 83, 196, 324
Eco24I GRGCYC 1 cut(s) 433
Eco47III AGCGCT 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 433
FaiI YATR 6 cut(s) 160, 230, 277, 305, 383, 407
Fnu4HI GCNGC 3 cut(s) 280, 283, 297
FokI GGATG 2 cut(s) 206, 325
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 3 cut(s) 280, 283, 297
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 286
GluI GCNGC 3 cut(s) 280, 283, 297
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 2 cut(s) 163, 431
HgaI GACGC 2 cut(s) 40, 341
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 32
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 40, 334
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 2 cut(s) 177, 335
HpyCH4V TGCA 4 cut(s) 54, 263, 279, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 32
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 83, 196, 324
LpnPI CCDG 6 cut(s) 26, 176, 177, 192, 203, 375
Lsp1109I GCAGC 3 cut(s) 283, 291, 294
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 28, 385
MalI GATC 3 cut(s) 85, 198, 326
MboI GATC 3 cut(s) 83, 196, 324
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 265, 381, 433
MluCI AATT 4 cut(s) 88, 126, 181, 252
MnlI CCTC 4 cut(s) 7, 19, 251, 303
MseI TTAA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 3 cut(s) 83, 196, 324
NlaIV GGNNCC 3 cut(s) 6, 378, 431
NmuCI GTSAC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 281, 284, 298
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 6, 378, 431
PspOMI GGGCCC 1 cut(s) 429
PspPI GGNCC 2 cut(s) 429, 430
RsaI GTAC 2 cut(s) 150, 243
RsaNI GTAC 2 cut(s) 149, 242
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 280, 283, 297
Sau3AI GATC 3 cut(s) 83, 196, 324
Sau96I GGNCC 2 cut(s) 429, 430
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 3 cut(s) 265, 381, 433
SetI ASST 3 cut(s) 30, 262, 345
Sse9I AATT 4 cut(s) 88, 126, 181, 252
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 88, 126, 181, 252
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 51, 358
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 279, 282, 296
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 2 cut(s) 51, 358
VneI GTGCAC 1 cut(s) 261
XapI RAATTY 1 cut(s) 88
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.