Rh5CG460400

Calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000535
Physical Location & Seq
Reverse (-)
64277259 .. 64292281
15023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG460400.1

Sequence Viewer

Length: 375 bp
ATGGCTTTTTCCAAAGAGAATTTAGGACTGCTCCTCATGATTTGCCTCAAAGCTATGCTCATCTGCTTGTTGTTTTCTATTGGAGTCGAGGTTATTGATGCTAGGAAGATTGGTTACGTTTCAATTAAGGCATCAGCCGGATCAGTACTTCCTCCGGCTGTTGCTCCTTACCAAAGAGGTTGCTCCCCAATTACAAGGACAGCTCATCTGAGGTTCCCATCTGATCCCTGGGATGGCATCGCTGAATTAGCTAATGATTTGATTCGAGGAATGCTCTGTGAAGGTCCTTCTAAAAGGCTCACCGCTCACCAGGTTTTAGGTAGTTTAAGTAACGATTGCAGTATCAGAGTTTGCTCAAATAAACACATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214
Pfam Domains
Protein Families
Pkinase

Protein Analysis

124

Amino Acids

13.36

Weight (kDa)

8.85

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 305
AciI CCGC 1 cut(s) 303
AclWI GGATC 2 cut(s) 148, 218
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 123
AjnI CCWGG 2 cut(s) 227, 309
AluBI AGCT 3 cut(s) 53, 203, 251
AluI AGCT 3 cut(s) 53, 203, 251
AlwI GGATC 2 cut(s) 148, 218
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 292, 299
AvaII GGWCC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BccI CCATC 2 cut(s) 226, 227
BciT130I CCWGG 2 cut(s) 229, 311
BfaI CTAG 1 cut(s) 102
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 229, 311
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 229, 311
BmsI GCATC 3 cut(s) 88, 140, 246
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BsaJI CCNNGG 2 cut(s) 227, 228
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 233
BseBI CCWGG 2 cut(s) 229, 311
BseDI CCNNGG 2 cut(s) 227, 228
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 138, 155
BslI CCNNNNNNNGG 1 cut(s) 233
BsmI GAATGC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 140, 223
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 201
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 2 cut(s) 148, 218
BsrBI CCGCTC 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 227, 228
BssMI GATC 2 cut(s) 140, 223
Bst2UI CCWGG 2 cut(s) 229, 311
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 143, 226
BstMBI GATC 2 cut(s) 140, 223
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 229, 311
BstSCI CCNGG 2 cut(s) 227, 309
BtgZI GCGATG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 238
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 37
CviJI RGCY 7 cut(s) 5, 53, 137, 158, 203, 251, 298
CviKI_1 RGCY 7 cut(s) 5, 53, 137, 158, 203, 251, 298
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 142, 225
DpnII GATC 2 cut(s) 140, 223
Eco47I GGWCC 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 227, 309
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 38, 56
FatI CATG 1 cut(s) 36
FokI GGATG 1 cut(s) 245
FspBI CTAG 1 cut(s) 102
HapII CCGG 2 cut(s) 138, 155
Hin1II CATG 1 cut(s) 40
HinfI GANTC 2 cut(s) 84, 262
HpaII CCGG 2 cut(s) 138, 155
HphI GGTGA 2 cut(s) 292, 299
Hpy188I TCNGA 3 cut(s) 210, 223, 347
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 275, 297
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 140, 223
LmnI GCTCC 3 cut(s) 36, 169, 188
LpnPI CCDG 6 cut(s) 151, 168, 214, 241, 296, 323
LweI GCATC 3 cut(s) 88, 140, 246
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 113, 329
MalI GATC 2 cut(s) 142, 225
MbiI CCGCTC 1 cut(s) 305
MboI GATC 2 cut(s) 140, 223
MboII GAAGA 1 cut(s) 118
MluCI AATT 4 cut(s) 19, 123, 189, 245
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 7 cut(s) 44, 56, 82, 162, 170, 204, 260
MseI TTAA 2 cut(s) 126, 326
MspI CCGG 2 cut(s) 138, 155
MspR9I CCNGG 2 cut(s) 229, 311
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 2 cut(s) 229, 311
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 140, 223
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 215
PagI TCATGA 1 cut(s) 36
PasI CCCWGGG 1 cut(s) 228
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 227, 309
PspGI CCWGG 2 cut(s) 227, 309
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 284
PspPPI RGGWCCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 126, 326
Sau3AI GATC 2 cut(s) 140, 223
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 229, 311
SexAI ACCWGGT 1 cut(s) 309
SfaNI GCATC 3 cut(s) 88, 140, 246
SinI GGWCC 1 cut(s) 284
Sse9I AATT 4 cut(s) 19, 123, 189, 245
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 227, 309
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 87, 265
TasI AATT 4 cut(s) 19, 123, 189, 245
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 126, 326
Tru9I TTAA 2 cut(s) 126, 326
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.