Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

12969612 .. 12970093

Gene Structure 482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTATGGCCACAAACTCCCCCTTCTCCAGTGTGTCATGCTTTGCTTTAGGGTGCGCTGCAGGTCGTTTCTCTTTGCATTTCCTTCTCCTTGGACTTGCTGTTAGCGGTTTTGATGGAGCACTGTTTGATCCGAGATTGGCTGTTACTTTGATTCCTGATGGGTCGGGTGATGGAGAGCATCATCGAGGGCCAGTTGTGGCTGCTGCTGCTGGAGTTGATGGTAGCAATCTGGTGTTGGTGAAGGATGGCGTTCTGGCTCCGTCTGGGAGTGGTCTGTGTTGGCTTGGTCGTGGTGGCTTGTTGGTAAAATTGTACCAGTGCTTTACGGCGGCGGGGCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

12.69

Weight (kDa)

6.37

Isoelectric Point (pI)

21.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	2 cut(s)	53, 353
AciI	CCGC	4 cut(s)	108, 332, 335, 340
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	3 cut(s)	9, 191, 378
ApeKI	GCWGC	4 cut(s)	59, 203, 206, 209
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	191, 378
AsuHPI	GGTGA	3 cut(s)	182, 253, 361
BalI	TGGCCA	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	46, 190, 193, 196
BccI	CCATC	5 cut(s)	110, 155, 167, 215, 242
BceAI	ACGGC	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	2 cut(s)	53, 353
BisI	GCNGC	5 cut(s)	60, 204, 207, 210, 333
BlsI	GCNGC	5 cut(s)	61, 205, 208, 211, 334
BmgT120I	GGNCC	2 cut(s)	191, 378
BmiI	GGNNCC	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	385
BpmI	CTGGAG	2 cut(s)	13, 234
BsaJI	CCNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	4 cut(s)	30, 194, 319, 380
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	253
BseNI	ACTGG	4 cut(s)	30, 194, 319, 380
BseXI	GCAGC	4 cut(s)	46, 190, 193, 196
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	11, 193, 380
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	11, 193, 380
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	108, 332, 335, 340
BspANI	GGCC	3 cut(s)	11, 193, 380
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	53, 353
BspPI	GGATC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	4 cut(s)	30, 194, 319, 380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	46, 190, 193, 196
BsuRI	GGCC	3 cut(s)	11, 193, 380
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	4 cut(s)	37, 122, 326, 373
BveI	ACCTGC	2 cut(s)	53, 353
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	191, 378
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	9 cut(s)	5, 11, 143, 193, 203, 260, 286, 300, 380
CviKI_1	RGCY	9 cut(s)	5, 11, 143, 193, 203, 260, 286, 300, 380
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	42
FaiI	YATR	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	1 cut(s)	38
FauI	CCCGC	2 cut(s)	328, 333
Fnu4HI	GCNGC	5 cut(s)	60, 204, 207, 210, 333
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	5 cut(s)	60, 204, 207, 210, 333
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	5 cut(s)	60, 204, 207, 210, 333
GsuI	CTGGAG	2 cut(s)	13, 234
HaeIII	GGCC	3 cut(s)	11, 193, 380
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	3 cut(s)	182, 253, 361
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	34, 95, 238
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	62, 79, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	119, 265
Lsp1109I	GCAGC	4 cut(s)	46, 190, 193, 196
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	145, 367
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	11
MnlI	CCTC	2 cut(s)	182, 341
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	61, 205, 208, 211, 334
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	191, 378
PstI	CTGCAG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SatI	GCNGC	5 cut(s)	60, 204, 207, 210, 333
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	191, 378
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	3 cut(s)	67, 352, 367
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	4 cut(s)	108, 332, 335, 340
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	4 cut(s)	37, 129, 326, 380
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	59, 203, 206, 209
Tsp45I	GTSAC	1 cut(s)	367
TspGWI	ACGGA	2 cut(s)	252, 360
TspRI	CASTG	4 cut(s)	37, 129, 326, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.