Rmu_sc0006276.1_g000001

Calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006276.1
OG0000535
Physical Location & Seq
Forward (+)
2777 .. 4576
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006276.1_g000001.1.cds

Sequence Viewer

Length: 855 bp
atggccggcaacggtgaaattctaactaagggggtgaggctctctcctttctctctgatcgacatggctgctgggcagcgaaatttcccgacgtcggttgggattgaagatggtttggaggtcgattttgctactgtggttgacgaagactctcgagcctgggttgttgttgggatccgatttctgctgggatcaggattgggtcggcaatctttgtttgtctttatggatcgaggttctggaaaggccgccggtgatctggtgtttttggtggcggcgccttccacggtgacggtggtagcggcgtctattgtggtgggtcaatggtgcatttcgacgacgaccggaaagggcatgggtgatggtctgatcggccttgccttggcgaagatgcagaggtacttttccgttgggcggcgttacagatctggaagggtggccggacgttgggatgcggctgctgctattggagttgatggcaggtgctttacggcggcggcgcgggacagaggtggtggttatgcaggtatcacccactgcgatgcgttagatcggagctctaaccctagggtttgggcgcttggctttgggctttttgggctcaggtttctttgggtgtggactgaccctatgcattggggctgccggtttaggagtgcaggggtaattctttacattcttcttagtggaataccaccattttgggggaagataaagtcaagcatatttgatgctgttaggacagctgatctgaggttcccatctgatccttgggatggcaccagtgaattagctaatgatttgattcaaggaatgctttgtaaagatccttctaaaaggctcaccgctcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214
Pfam Domains
Protein Families
Pkinase

Protein Analysis

284

Amino Acids

30.52

Weight (kDa)

9.24

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 471
AatII GACGTC 1 cut(s) 95
Acc36I ACCTGC 2 cut(s) 471, 515
AccB1I GGYRCC 2 cut(s) 277, 779
AccBSI CCGCTC 1 cut(s) 848
AccII CGCG 1 cut(s) 502
AciI CCGC 9 cut(s) 249, 275, 302, 415, 455, 494, 497, 502, 846
AclWI GGATC 6 cut(s) 169, 182, 199, 237, 761, 821
AcoI YGGCCR 2 cut(s) 3, 438
AcsI RAATTY 2 cut(s) 18, 82
AcyI GRCGYC 3 cut(s) 92, 278, 305
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 6 cut(s) 94, 382, 414, 447, 704, 776
AgsI TTSAA 2 cut(s) 107, 809
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 3 cut(s) 558, 746, 794
AluI AGCT 3 cut(s) 558, 746, 794
Alw21I GWGCWC 1 cut(s) 560
AlwI GGATC 6 cut(s) 169, 182, 199, 237, 761, 821
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 4 cut(s) 3, 246, 373, 438
ApeKI GCWGC 5 cut(s) 68, 76, 458, 461, 642
ApoI RAATTY 2 cut(s) 18, 82
AspA2I CCTAGG 1 cut(s) 566
AspLEI GCGC 3 cut(s) 280, 502, 580
AsuHPI GGTGA 7 cut(s) 26, 46, 266, 301, 371, 523, 835
AvaI CYCGRG 1 cut(s) 153
AvrII CCTAGG 1 cut(s) 566
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 2 cut(s) 277, 779
BanII GRGCYC 2 cut(s) 560, 603
BarI GAAGNNNNNNTAC 2 cut(s) 814, 846
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 55, 88, 445, 448, 629
BccI CCATC 5 cut(s) 104, 356, 470, 769, 770
BceAI ACGGC 1 cut(s) 507
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 1 cut(s) 160
BfaI CTAG 2 cut(s) 567, 853
BfoI RGCGCY 2 cut(s) 281, 581
BfuAI ACCTGC 2 cut(s) 471, 515
BglII AGATCT 1 cut(s) 425
BlnI CCTAGG 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 153
BmiI GGNNCC 4 cut(s) 176, 279, 758, 781
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 4 cut(s) 381, 442, 532, 721
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu10I CCTNAGC 1 cut(s) 602
BsaHI GRCGYC 3 cut(s) 92, 278, 305
BsaJI CCNNGG 5 cut(s) 159, 285, 381, 566, 770
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 382, 414, 447, 704, 776
Bse118I RCCGGY 3 cut(s) 5, 251, 645
Bse1I ACTGG 1 cut(s) 783
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 159, 285, 381, 566, 770
BseGI GGATG 2 cut(s) 457, 781
BseLI CCNNNNNNNGG 6 cut(s) 94, 382, 414, 447, 704, 776
BseMII CTCAG 2 cut(s) 616, 743
BseNI ACTGG 1 cut(s) 783
BseXI GCAGC 5 cut(s) 55, 88, 445, 448, 629
BseYI CCCAGC 2 cut(s) 71, 187
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 502
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 4 cut(s) 5, 248, 375, 440
BshNI GGYRCC 2 cut(s) 277, 779
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 5 cut(s) 6, 252, 345, 441, 646
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 6 cut(s) 94, 382, 414, 447, 704, 776
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 819
BsnI GGCC 4 cut(s) 5, 248, 375, 440
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 560, 603
BspACI CCGC 9 cut(s) 249, 275, 302, 415, 455, 494, 497, 502, 846
BspANI GGCC 4 cut(s) 5, 248, 375, 440
BspCNI CTCAG 2 cut(s) 615, 744
BspFNI CGCG 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 176, 279, 758, 781
BspMI ACCTGC 2 cut(s) 471, 515
BspPI GGATC 6 cut(s) 169, 182, 199, 237, 761, 821
BspT107I GGYRCC 2 cut(s) 277, 779
BsrBI CCGCTC 1 cut(s) 848
BsrFI RCCGGY 3 cut(s) 5, 251, 645
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 3 cut(s) 5, 251, 645
BssECI CCNNGG 5 cut(s) 159, 285, 381, 566, 770
BssNI GRCGYC 3 cut(s) 92, 278, 305
BssT1I CCWWGG 3 cut(s) 381, 566, 770
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 14, 136, 289, 295
BstACI GRCGYC 3 cut(s) 92, 278, 305
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 27, 602, 683, 752
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 457, 781
BstFNI CGCG 1 cut(s) 502
BstH2I RGCGCY 2 cut(s) 281, 581
BstHHI GCGC 3 cut(s) 280, 502, 580
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 2 cut(s) 461, 598
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 1 cut(s) 502
BstV1I GCAGC 5 cut(s) 55, 88, 445, 448, 629
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 3 cut(s) 174, 425, 826
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 3 cut(s) 174, 425, 826
BsuRI GGCC 4 cut(s) 5, 248, 375, 440
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 457, 781
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 535, 790
BveI ACCTGC 2 cut(s) 471, 515
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 3 cut(s) 280, 502, 580
Cfr10I RCCGGY 3 cut(s) 5, 251, 645
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 64, 355
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 4 cut(s) 27, 602, 683, 752
DinI GGCGCC 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 3, 438
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 3 cut(s) 381, 566, 770
Eco24I GRGCYC 2 cut(s) 560, 603
Eco53kI GAGCTC 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 3 cut(s) 381, 566, 770
EcoT22I ATGCAT 1 cut(s) 636
EcoT38I GRGCYC 2 cut(s) 560, 603
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 3 cut(s) 381, 566, 770
FaeI CATG 2 cut(s) 67, 358
FaiI YATR 6 cut(s) 65, 227, 356, 522, 632, 725
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 518
FatI CATG 2 cut(s) 63, 354
FauI CCCGC 1 cut(s) 495
FokI GGATG 2 cut(s) 464, 788
FriOI GRGCYC 2 cut(s) 560, 603
FspBI CTAG 2 cut(s) 567, 853
GlaI GCGC 3 cut(s) 279, 501, 579
GsaI CCCAGC 2 cut(s) 75, 191
HaeII RGCGCY 2 cut(s) 281, 581
HaeIII GGCC 4 cut(s) 5, 248, 375, 440
HapII CCGG 5 cut(s) 6, 252, 345, 441, 646
HgaI GACGC 1 cut(s) 294
HhaI GCGC 3 cut(s) 280, 502, 580
Hin1I GRCGYC 3 cut(s) 92, 278, 305
Hin1II CATG 2 cut(s) 67, 358
Hin6I GCGC 3 cut(s) 278, 500, 578
HinP1I GCGC 3 cut(s) 278, 500, 578
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 149, 805
HpaII CCGG 5 cut(s) 6, 252, 345, 441, 646
HphI GGTGA 7 cut(s) 26, 46, 266, 301, 371, 523, 835
Hpy166II GTNNAC 2 cut(s) 142, 621
Hpy188I TCNGA 6 cut(s) 57, 179, 369, 555, 753, 766
Hpy188III TCNNGA 5 cut(s) 88, 153, 195, 240, 429
Hpy8I GTNNAC 2 cut(s) 142, 621
Hpy99I CGWCG 4 cut(s) 94, 97, 340, 343
HpyAV CCTTC 3 cut(s) 291, 426, 840
HpyCH4III ACNGT 4 cut(s) 14, 136, 289, 295
HpyCH4IV ACGT 2 cut(s) 92, 445
HpyCH4V TGCA 5 cut(s) 330, 394, 524, 634, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 598
HpyF3I CTNAG 4 cut(s) 27, 602, 683, 752
HpySE526I ACGT 2 cut(s) 92, 445
Hsp92I GRCGYC 3 cut(s) 92, 278, 305
Hsp92II CATG 2 cut(s) 67, 358
HspAI GCGC 3 cut(s) 278, 500, 578
KasI GGCGCC 1 cut(s) 277
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 5 cut(s) 55, 88, 445, 448, 629
LweI GCATC 4 cut(s) 381, 442, 532, 721
MaeI CTAG 2 cut(s) 567, 853
MaeII ACGT 2 cut(s) 92, 445
MaeIII GTNAC 2 cut(s) 289, 419
MbiI CCGCTC 1 cut(s) 848
MboII GAAGA 5 cut(s) 119, 158, 400, 671, 721
MflI RGATCY 3 cut(s) 174, 425, 826
MhlI GDGCHC 2 cut(s) 560, 603
MluCI AATT 4 cut(s) 18, 82, 666, 788
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 30, 112, 227, 390, 503, 747
Mph1103I ATGCAT 1 cut(s) 636
MroNI GCCGGC 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 5 cut(s) 6, 252, 345, 441, 646
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 819
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 502
MwoI GCNNNNNNNGC 2 cut(s) 461, 598
NaeI GCCGGC 1 cut(s) 7
NarI GGCGCC 1 cut(s) 278
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 67, 358
NlaIV GGNNCC 4 cut(s) 176, 279, 758, 781
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 636
PaeR7I CTCGAG 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 471
PctI GAATGC 1 cut(s) 819
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 805
PleI GAGTC 1 cut(s) 143
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 2 cut(s) 71, 187
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 176, 279, 758, 781
PsuI RGATCY 3 cut(s) 174, 425, 826
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 1 cut(s) 560
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 560, 603
SfaNI GCATC 4 cut(s) 381, 442, 532, 721
SfoI GGCGCC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 4 cut(s) 18, 82, 666, 788
SsiI CCGC 9 cut(s) 249, 275, 302, 415, 455, 494, 497, 502, 846
SspDI GGCGCC 1 cut(s) 277
SspMI CTAG 2 cut(s) 567, 853
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 3 cut(s) 381, 566, 770
TaaI ACNGT 4 cut(s) 14, 136, 289, 295
TaiI ACGT 2 cut(s) 95, 448
TaqI TCGA 5 cut(s) 60, 123, 154, 232, 335
TasI AATT 4 cut(s) 18, 82, 666, 788
TauI GCSGC 7 cut(s) 251, 278, 305, 418, 458, 497, 500
TfiI GAWTC 1 cut(s) 805
TscAI CASTG 2 cut(s) 542, 790
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 5 cut(s) 68, 76, 458, 461, 642
Tsp45I GTSAC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 2 cut(s) 542, 790
XapI RAATTY 2 cut(s) 18, 82
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 768
XhoI CTCGAG 1 cut(s) 153
XmaJI CCTAGG 1 cut(s) 566
XspI CTAG 2 cut(s) 567, 853
ZraI GACGTC 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.