RLG00000029949

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000535
Physical Location & Seq
Forward (+)
51940986 .. 51941686
701 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029949

Sequence Viewer

Length: 417 bp
ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTACTTTGTTCTTGGGCGCACTGGTGAATGCTATTTTTTGTTTTTCCTCCTTCTTATGCTCGGTGTTTGCGGCTTTGATGGGGGACCATTAGATTCGGTTTTGGATCGGACTTTGGATCCTTACGTTGGCCCGGGGCATTTTGGCCTGGTTGGTTTTGGAGATGAGGGCAGCAATCTGGTAATGGTGAAGGATGGTGATCTAGCTCGATTTGCTTTCTTTGGCAATACTCGCGGCTGGGGTGGGAATCAGCCTGGTCGTGGTGGTCTAGCAGTGGCTCTGTGCGGAAGCTTTGCGGTGGCGTGGCAAGTTGGAGGTGGTGGTGGTCTAGACGCTAGGGTGTCCTCATCAATTGGCGTCATCTGGGCCTTGTTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.25

Weight (kDa)

4.75

Isoelectric Point (pI)

22.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AciI CCGC 4 cut(s) 108, 270, 321, 332
AclWI GGATC 3 cut(s) 149, 150, 162
AcyI GRCGYC 1 cut(s) 393
AfiI CCNNNNNNNGG 2 cut(s) 164, 296
AjnI CCWGG 2 cut(s) 183, 289
AluBI AGCT 2 cut(s) 242, 327
AluI AGCT 2 cut(s) 242, 327
AlwI GGATC 3 cut(s) 149, 150, 162
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 3 cut(s) 166, 181, 402
ApeKI GCWGC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 122, 167, 402
AsuC2I CCSGG 2 cut(s) 170, 171
AsuHPI GGTGA 3 cut(s) 74, 235, 245
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 110, 224
BciT130I CCWGG 2 cut(s) 185, 291
BcnI CCSGG 2 cut(s) 170, 171
BfaI CTAG 4 cut(s) 239, 305, 365, 372
BisI GCNGC 3 cut(s) 109, 208, 271
BlsI GCNGC 3 cut(s) 110, 209, 272
Bme1390I CCNGG 4 cut(s) 170, 171, 185, 291
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 122, 167, 402
BmiI GGNNCC 2 cut(s) 123, 156
BmrFI CCNGG 4 cut(s) 170, 171, 185, 291
BpmI CTGGAG 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 170, 171
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 169, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 296
Bse1I ACTGG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 2 cut(s) 185, 291
BseDI CCNNGG 2 cut(s) 169, 170
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 164, 296
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 168, 183, 404
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 164, 296
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 168, 183, 404
BsoBI CYCGRG 1 cut(s) 169
Bsp143I GATC 3 cut(s) 142, 154, 235
BspACI CCGC 4 cut(s) 108, 270, 321, 332
BspANI GGCC 3 cut(s) 168, 183, 404
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 123, 156
BspPI GGATC 3 cut(s) 149, 150, 162
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 169, 170
BssMI GATC 3 cut(s) 142, 154, 235
BssNI GRCGYC 1 cut(s) 393
Bst2UI CCWGG 2 cut(s) 185, 291
BstACI GRCGYC 1 cut(s) 393
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 145, 157, 238
BstMBI GATC 3 cut(s) 142, 154, 235
BstMWI GCNNNNNNNGC 2 cut(s) 248, 267
BstNI CCWGG 2 cut(s) 185, 291
BstSCI CCNGG 4 cut(s) 168, 169, 183, 289
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 3 cut(s) 168, 183, 404
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 57, 315
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 3 cut(s) 122, 167, 402
Cfr9I CCCGGG 1 cut(s) 169
CseI GACGC 2 cut(s) 377, 382
DpnI GATC 3 cut(s) 144, 156, 237
DpnII GATC 3 cut(s) 142, 154, 235
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 183, 289
FaiI YATR 1 cut(s) 95
FaqI GGGAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 109, 208, 271
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 109, 208, 271
FspBI CTAG 4 cut(s) 239, 305, 365, 372
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 109, 208, 271
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 3 cut(s) 168, 183, 404
HapII CCGG 1 cut(s) 170
HgaI GACGC 2 cut(s) 377, 382
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 393
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 2 cut(s) 131, 283
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 74, 235, 245
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 3 cut(s) 33, 98, 220
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 267
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 393
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 142, 154, 235
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 4 cut(s) 239, 305, 365, 372
MaeII ACGT 1 cut(s) 162
MalI GATC 3 cut(s) 144, 156, 237
MboI GATC 3 cut(s) 142, 154, 235
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 154
MluCI AATT 2 cut(s) 15, 387
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 5 cut(s) 37, 95, 196, 344, 391
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 4 cut(s) 170, 171, 185, 291
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 185, 291
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 248, 267
NciI CCSGG 2 cut(s) 170, 171
NdeII GATC 3 cut(s) 142, 154, 235
NlaIV GGNNCC 2 cut(s) 123, 156
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 131, 283
PkrI GCNGC 3 cut(s) 110, 209, 272
Psp6I CCWGG 2 cut(s) 183, 289
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 183, 289
PspN4I GGNNCC 2 cut(s) 123, 156
PspPI GGNCC 3 cut(s) 122, 167, 402
PsuI RGATCY 1 cut(s) 154
SatI GCNGC 3 cut(s) 109, 208, 271
Sau3AI GATC 3 cut(s) 142, 154, 235
Sau96I GGNCC 3 cut(s) 122, 167, 402
ScrFI CCNGG 4 cut(s) 170, 171, 185, 291
SetI ASST 4 cut(s) 165, 244, 329, 355
SinI GGWCC 1 cut(s) 122
SmaI CCCGGG 1 cut(s) 171
Sse9I AATT 2 cut(s) 15, 387
SsiI CCGC 4 cut(s) 108, 270, 321, 332
SspMI CTAG 4 cut(s) 239, 305, 365, 372
StyD4I CCNGG 4 cut(s) 168, 169, 183, 289
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 15, 387
TauI GCSGC 2 cut(s) 111, 273
TfiI GAWTC 2 cut(s) 131, 283
TscAI CASTG 2 cut(s) 64, 315
TseI GCWGC 1 cut(s) 207
TspMI CCCGGG 1 cut(s) 169
TspRI CASTG 2 cut(s) 64, 315
VpaK11BI GGWCC 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 169
XspI CTAG 4 cut(s) 239, 305, 365, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.