RLG00000031263

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000535
Physical Location & Seq
Reverse (-)
3484928 .. 3485469
542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031263

Sequence Viewer

Length: 540 bp
ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCGTGTCATGCTTTGCTTTAGGGTGCGCTACAGGTCGTTTCTCTTTGCTTTTCCTTCTCCTTGGACTCGCTGTTAGAGGTTTTGATGGAGGACTGTTTGATCCGACTTTGGCTCTTGCTTTGATTCCTGTTGGGTCGGGTGATGGAGGTTATGGGGATAAAGCAATTGATCCTTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAGTGGCACCCTAACAACCTGCTTGAGTCCAAAGCATCATCGAGGGCCAGTCGCTGCTGCTGCTGTTGGAGTTGATGGCGGCAATCTGTTGTTGGTAAAGGACGACATTCTAGCTCCTTCTGGTAGTGGTCTGCGTCGGCATGGTCGTGGTGGCTTATTGTACCAGAGCTTTACGGCGGCGTCACGGGTTAGAGGTGGTGGTAGTGCAGGTGTCACCCATTGGGCCACGTTAGATCGGAGCTCTACCCCTAGCTTTCGGTCTCCTGGCTTTGGGCTTTTTGGGCTCCGGTATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

18.46

Weight (kDa)

10.27

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 2 cut(s) 269, 440
AccB1I GGYRCC 1 cut(s) 248
AccII CGCG 1 cut(s) 240
AciI CCGC 2 cut(s) 321, 419
AclWI GGATC 2 cut(s) 125, 194
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 29, 512
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 4 cut(s) 356, 411, 483, 495
AluI AGCT 4 cut(s) 356, 411, 483, 495
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 2 cut(s) 125, 194
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 2 cut(s) 287, 465
ApeKI GCWGC 3 cut(s) 296, 299, 302
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 287, 465
AsuHPI GGTGA 2 cut(s) 182, 448
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 485, 528
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 283, 286, 289
BccI CCATC 3 cut(s) 110, 167, 311
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 2 cut(s) 353, 492
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 269, 440
BisI GCNGC 5 cut(s) 297, 300, 303, 322, 420
BlsI GCNGC 5 cut(s) 298, 301, 304, 323, 421
Bme1390I CCNGG 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 287, 465
BmiI GGNNCC 2 cut(s) 250, 527
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 91, 203
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 512
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 91, 203
BseLI CCNNNNNNNGG 2 cut(s) 29, 512
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 283, 286, 289
BsgI GTGCAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 289, 467
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 2 cut(s) 30, 529
BslI CCNNNNNNNGG 2 cut(s) 29, 512
BsmAI GTCTC 1 cut(s) 507
BsnI GGCC 2 cut(s) 289, 467
Bso31I GGTCTC 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 485, 528
Bsp143I GATC 3 cut(s) 130, 199, 475
BspACI CCGC 2 cut(s) 321, 419
BspANI GGCC 2 cut(s) 289, 467
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 250, 527
BspMI ACCTGC 2 cut(s) 269, 440
BspPI GGATC 2 cut(s) 125, 194
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 507
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 91, 203
BssMI GATC 3 cut(s) 130, 199, 475
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 91, 203
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 422
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 133, 202, 478
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 130, 199, 475
BstMWI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 523
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 283, 286, 289
BsuRI GGCC 2 cut(s) 289, 467
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 2 cut(s) 269, 440
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 287, 465
CseI GACGC 3 cut(s) 229, 365, 411
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 39, 383
CviQI GTAC 1 cut(s) 403
DpnI GATC 3 cut(s) 132, 201, 477
DpnII GATC 3 cut(s) 130, 199, 475
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 91, 203
Eco24I GRGCYC 2 cut(s) 485, 528
Eco31I GGTCTC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 91, 203
EcoT38I GRGCYC 2 cut(s) 485, 528
ErhI CCWWGG 2 cut(s) 91, 203
FaeI CATG 2 cut(s) 42, 386
FaiI YATR 3 cut(s) 40, 183, 384
FatI CATG 2 cut(s) 38, 382
Fnu4HI GCNGC 5 cut(s) 297, 300, 303, 322, 420
FriOI GRGCYC 2 cut(s) 485, 528
Fsp4HI GCNGC 5 cut(s) 297, 300, 303, 322, 420
FspBI CTAG 2 cut(s) 353, 492
GlaI GCGC 1 cut(s) 58
GluI GCNGC 5 cut(s) 297, 300, 303, 322, 420
HaeIII GGCC 2 cut(s) 289, 467
HapII CCGG 2 cut(s) 30, 529
HgaI GACGC 3 cut(s) 229, 365, 411
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 42, 386
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 3 cut(s) 96, 154, 268
HpaII CCGG 2 cut(s) 30, 529
HphI GGTGA 2 cut(s) 182, 448
Hpy188I TCNGA 2 cut(s) 135, 480
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 3 cut(s) 34, 95, 369
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 523
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 42, 386
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 130, 199, 475
LmnI GCTCC 3 cut(s) 361, 480, 531
Lsp1109I GCAGC 3 cut(s) 283, 286, 289
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 353, 492
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 423, 454
MalI GATC 3 cut(s) 132, 201, 477
MboI GATC 3 cut(s) 130, 199, 475
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 485, 528
MluCI AATT 1 cut(s) 195
MlyI GAGTC 2 cut(s) 90, 277
MmeI TCCRAC 2 cut(s) 158, 289
MnlI CCTC 8 cut(s) 101, 113, 170, 201, 207, 238, 278, 428
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 2 cut(s) 30, 529
MspR9I CCNGG 1 cut(s) 507
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 523
NdeII GATC 3 cut(s) 130, 199, 475
NlaIII CATG 2 cut(s) 42, 386
NlaIV GGNNCC 2 cut(s) 250, 527
NmuCI GTSAC 2 cut(s) 423, 454
PaqCI CACCTGC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 5 cut(s) 298, 301, 304, 323, 421
PleI GAGTC 2 cut(s) 90, 276
PpsI GAGTC 2 cut(s) 90, 276
Psp124BI GAGCTC 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 250, 527
PspPI GGNCC 2 cut(s) 287, 465
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 485
SatI GCNGC 5 cut(s) 297, 300, 303, 322, 420
Sau3AI GATC 3 cut(s) 130, 199, 475
Sau96I GGNCC 2 cut(s) 287, 465
SchI GAGTC 2 cut(s) 90, 277
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 2 cut(s) 485, 528
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 195
SsiI CCGC 2 cut(s) 321, 419
SspMI CTAG 2 cut(s) 353, 492
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 2 cut(s) 91, 203
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 283
TaqII GACCGA 1 cut(s) 489
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 324, 422
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 423, 454
TseI GCWGC 3 cut(s) 296, 299, 302
Tsp45I GTSAC 2 cut(s) 423, 454
TspRI CASTG 1 cut(s) 250
XspI CTAG 2 cut(s) 353, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.