RLG00000027764

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000535
Physical Location & Seq
Forward (+)
14933831 .. 14934422
592 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027764

Sequence Viewer

Length: 411 bp
ATGGCTCTTGCCACAATTGACCCTTCCTCCAGCGTGTCTGGCGTCGTTCTGGGGCACGCTGATGAATGCTATTCTTTGCTTTTCCTCTTTCTGCTCGATGTTTGCAGCTTTGGAAGAGGACTATCAGATTCGGGTTTGGATCTGACTTTGGATCCTTATAAGTTGGGTGAAGGTGGAGATGAGGGCAGCGATCTGCTGATAGTGAAGGATGGTGGTCTGGCTCAATCTGCTTTCGTTCGCGATGCCGGCGGCTGGGATAGGAATCGGCCTGGTCGTGGTGGCCTACTAGTGGCTCTATGCCGGAGCTTTGTGGAGGTGAGACAATTCGGAGGTGGTGCTGGGGTTACATTGCCATGTGGGTTGAGGCTCTGTGGGCAAATGCTTACTAGTGGGCCTGCTGGGCTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

13.95

Weight (kDa)

4.62

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 249
AclWI GGATC 3 cut(s) 146, 147, 159
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 252, 275, 289
AhlI ACTAGT 2 cut(s) 286, 386
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 2 cut(s) 108, 306
AluI AGCT 2 cut(s) 108, 306
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 3 cut(s) 146, 147, 159
AoxI GGCC 3 cut(s) 266, 280, 392
ApeKI GCWGC 2 cut(s) 105, 186
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 179, 328
BaeGI GKGCMC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 117, 198
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 2 cut(s) 286, 386
BfaI CTAG 2 cut(s) 287, 387
BglI GCCNNNNNGGC 1 cut(s) 400
BisI GCNGC 3 cut(s) 106, 187, 250
BlsI GCNGC 3 cut(s) 107, 188, 251
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 275, 289
Bse118I RCCGGY 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 3 cut(s) 252, 275, 289
BseMI GCAATG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 117, 198
BseYI CCCAGC 3 cut(s) 252, 338, 398
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 268, 282, 394
BsiSI CCGG 2 cut(s) 246, 301
BslI CCNNNNNNNGG 3 cut(s) 252, 275, 289
BsmAI GTCTC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 268, 282, 394
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 139, 151, 190
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 268, 282, 394
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 3 cut(s) 146, 147, 159
BsrDI GCAATG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 3 cut(s) 139, 151, 190
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 57, 247, 396, 405
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 3 cut(s) 142, 154, 193
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 139, 151, 190
BstMWI GCNNNNNNNGC 6 cut(s) 39, 227, 246, 373, 400, 404
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 117, 198
BstX2I RGATCY 2 cut(s) 139, 151
BstYI RGATCY 2 cut(s) 139, 151
BsuRI GGCC 3 cut(s) 268, 282, 394
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 214
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 4 cut(s) 57, 247, 396, 405
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 354
DpnI GATC 3 cut(s) 141, 153, 192
DpnII GATC 3 cut(s) 139, 151, 190
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 357
FaiI YATR 4 cut(s) 159, 298, 355, 409
FatI CATG 1 cut(s) 353
Fnu4HI GCNGC 3 cut(s) 106, 187, 250
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 106, 187, 250
FspBI CTAG 2 cut(s) 287, 387
GluI GCNGC 3 cut(s) 106, 187, 250
GsaI CCCAGC 3 cut(s) 256, 342, 402
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 3 cut(s) 268, 282, 394
HapII CCGG 2 cut(s) 246, 301
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 357
HinfI GANTC 2 cut(s) 128, 262
HpaII CCGG 2 cut(s) 246, 301
HphI GGTGA 2 cut(s) 179, 328
Hpy188I TCNGA 3 cut(s) 127, 144, 329
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 33, 164, 199
HpyCH4V TGCA 2 cut(s) 105, 407
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 227, 246, 373, 400, 404
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 357
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 3 cut(s) 139, 151, 190
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 2 cut(s) 117, 198
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 287, 387
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 141, 153, 192
MboI GATC 3 cut(s) 139, 151, 190
MboII GAAGA 1 cut(s) 126
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 139, 151
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 15, 323
MnlI CCTC 7 cut(s) 37, 95, 110, 175, 307, 323, 357
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 2 cut(s) 60, 352
MspI CCGG 2 cut(s) 246, 301
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 6 cut(s) 39, 227, 246, 373, 400, 404
NaeI GCCGGC 1 cut(s) 247
NdeII GATC 3 cut(s) 139, 151, 190
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 1 cut(s) 357
NlaIV GGNNCC 1 cut(s) 153
NruI TCGCGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PctI GAATGC 1 cut(s) 71
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 128, 262
PkrI GCNGC 3 cut(s) 107, 188, 251
PsiI TTATAA 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 3 cut(s) 252, 338, 398
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 2 cut(s) 139, 151
RruI TCGCGA 1 cut(s) 240
RseI CAYNNNNRTG 2 cut(s) 60, 352
SatI GCNGC 3 cut(s) 106, 187, 250
Sau3AI GATC 3 cut(s) 139, 151, 190
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 110, 175, 308, 318, 334
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 60, 352
SpeI ACTAGT 2 cut(s) 286, 386
Sse9I AATT 2 cut(s) 15, 323
SsiI CCGC 1 cut(s) 249
SspMI CTAG 2 cut(s) 287, 387
StyD4I CCNGG 1 cut(s) 268
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 15, 323
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 128, 262
TseI GCWGC 2 cut(s) 105, 186
TspDTI ATGAA 1 cut(s) 78
XspI CTAG 2 cut(s) 287, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.