Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

2344568 .. 2352091

Gene Structure 7524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGAGATTATTCATTATTGGTTCCGATCAGGAAGAGGTTTATGGCCAGCTCGATGTGTACAAGTATGAGAAGGCAGTGCTGGAAGAGCAGTCCAAGAAGAACTGCCGGTTTAACCAGGATGAAAATGTGTCATCGGATGATGATGATGATACCAAGGACGCTGGACTAAAAGGTAAGAAATTCATGAAAGAATGTATAATCGAGTTTCCTAACAACCTGCTTGAGCCAGAGCATCATCGAGGGCCAGTCGCGGCTGCTGTTGCTGAAGTTGATGGCGGCAATCTGGTGTTGGTGAAGGACGGCGCTCTGATTCTGTTTGGGAGTGGTCTGTGCCGGCTTGGTCGTGGTGGCTTGTTGGTGCAATGGTACCAGTGCTTTGCGGCGGCGGGGCGGGACGGAGGTGGTGGTTATGCAGATGTCACCCGTTGGGCCGTGTTCGATCGGAGCTCTAACCCTAGCGTTTGGTCTCCTGGCTTTGGGCTTTTTTGGCTCAGCCTCAATCCAATCCCCAGATTTTCGTACCAGGCTCTGAAAATCGAAAGCTTTCCAGGTACTAAAGCTTGGGCTACTTTTGATTGTGAAGACAGTTCCATTTTGCTGATCAACCAAGAAGCTTCTCCCATTTCTAGAGGGGCAGAGAAGAAGTTAGACAAGGAACTTTCAGTGCTTGAATGGGGTTCAAAGACTTGTCAAGTTGAAGTTATCACGAAGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp14

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

5.05

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	254
AciI	CCGC	6 cut(s)	254, 279, 383, 386, 389, 394
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	4 cut(s)	62, 371, 524, 556
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	674, 684, 701
AjnI	CCWGG	4 cut(s)	117, 472, 525, 550
AluBI	AGCT	5 cut(s)	52, 450, 546, 563, 617
AluI	AGCT	5 cut(s)	52, 450, 546, 563, 617
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	1 cut(s)	474
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	3 cut(s)	46, 245, 432
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	546
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	245, 432
AsuHPI	GGTGA	2 cut(s)	307, 415
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	319, 419
BciT130I	CCWGG	4 cut(s)	119, 474, 527, 552
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	459, 630
BfoI	RGCGCY	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	5 cut(s)	255, 258, 280, 384, 387
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	5 cut(s)	256, 259, 281, 385, 388
Bme1390I	CCNGG	4 cut(s)	119, 474, 527, 552
BmgT120I	GGNCC	2 cut(s)	245, 432
BmiI	GGNNCC	2 cut(s)	25, 371
BmrFI	CCNGG	4 cut(s)	119, 474, 527, 552
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	2 cut(s)	108, 336
Bse1I	ACTGG	2 cut(s)	248, 373
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	4 cut(s)	119, 474, 527, 552
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	127, 145
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	2 cut(s)	248, 373
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	3 cut(s)	48, 247, 434
BshNI	GGYRCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	109, 337
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	48, 247, 434
Bso31I	GGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	28, 442, 603
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	6 cut(s)	254, 279, 383, 386, 389, 394
BspANI	GGCC	3 cut(s)	48, 247, 434
BspCNI	CTCAG	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	25, 371
BspMI	ACCTGC	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	108, 336
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	248, 373
BssAI	RCCGGY	2 cut(s)	108, 336
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	28, 442, 603
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	119, 474, 527, 552
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	2 cut(s)	30, 81
BstAUI	TGTACA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	50, 338
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	127, 145
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	3 cut(s)	31, 445, 606
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	3 cut(s)	28, 442, 603
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 263, 490
BstNI	CCWGG	4 cut(s)	119, 474, 527, 552
BstSCI	CCNGG	4 cut(s)	117, 472, 525, 550
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	48, 247, 434
BtsCI	GGATG	2 cut(s)	127, 145
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 380, 672
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	50, 338
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	2 cut(s)	108, 336
Cfr13I	GGNCC	2 cut(s)	245, 432
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	4 cut(s)	61, 370, 523, 555
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	4 cut(s)	61, 370, 523, 555
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	3 cut(s)	30, 444, 605
DpnII	GATC	3 cut(s)	28, 442, 603
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	30, 81
EarI	CTCTTC	2 cut(s)	30, 81
Ecl136II	GAGCTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	450
EcoRII	CCWGG	4 cut(s)	117, 472, 525, 550
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	190
FaiI	YATR	5 cut(s)	45, 69, 188, 200, 414
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	382, 387
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	5 cut(s)	255, 258, 280, 384, 387
FokI	GGATG	2 cut(s)	134, 152
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	5 cut(s)	255, 258, 280, 384, 387
FspBI	CTAG	2 cut(s)	459, 630
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	255, 258, 280, 384, 387
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	48, 247, 434
HapII	CCGG	2 cut(s)	109, 337
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	3 cut(s)	544, 561, 615
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	109, 337
HphI	GGTGA	2 cut(s)	307, 415
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	28, 139, 312, 447, 534
Hpy188III	TCNNGA	4 cut(s)	32, 187, 630, 709
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	67, 292, 706
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	364, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 263, 490
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	336
KroNI	GCCGGC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	3 cut(s)	28, 442, 603
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	459, 630
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	3 cut(s)	30, 444, 605
MboI	GATC	3 cut(s)	28, 442, 603
MboII	GAAGA	6 cut(s)	16, 47, 98, 112, 596, 655
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	48
MnlI	CCTC	5 cut(s)	31, 236, 395, 509, 626
Mox20I	TGGCCA	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	2 cut(s)	109, 337
MspR9I	CCNGG	4 cut(s)	119, 474, 527, 552
MvaI	CCWGG	4 cut(s)	119, 474, 527, 552
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	88, 263, 490
NaeI	GCCGGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	28, 442, 603
NgoMIV	GCCGGC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	25, 371
NmuCI	GTSAC	1 cut(s)	421
PagI	TCATGA	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	256, 259, 281, 385, 388
Ple19I	CGATCG	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	4 cut(s)	117, 472, 525, 550
PspGI	CCWGG	4 cut(s)	117, 472, 525, 550
PspN4I	GGNNCC	2 cut(s)	25, 371
PspPI	GGNCC	2 cut(s)	245, 432
PstNI	CAGNNNCTG	1 cut(s)	532
PvuI	CGATCG	1 cut(s)	445
RsaI	GTAC	4 cut(s)	62, 371, 524, 556
RsaNI	GTAC	4 cut(s)	61, 370, 523, 555
SacI	GAGCTC	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	5 cut(s)	255, 258, 280, 384, 387
Sau3AI	GATC	3 cut(s)	28, 442, 603
Sau96I	GGNCC	2 cut(s)	245, 432
ScrFI	CCNGG	4 cut(s)	119, 474, 527, 552
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	6 cut(s)	254, 279, 383, 386, 389, 394
SspMI	CTAG	2 cut(s)	459, 630
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	117, 472, 525, 550
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	590
TaqI	TCGA	5 cut(s)	54, 204, 241, 441, 540
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	4 cut(s)	257, 282, 386, 389
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	3 cut(s)	84, 380, 672
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	4, 17, 138, 175, 203
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	84, 380, 672
XapI	RAATTY	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	2 cut(s)	459, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.