Rh5AG194100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000535
Physical Location & Seq
Forward (+)
22530669 .. 22531965
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG194100.1

Sequence Viewer

Length: 459 bp
ATGAGGGTTTTGGGTGCGAAGGCTCTGATGCGTCTCGACGAATTCTGTTCGGGGCGTTTTGGCCTTGTTGGTTTTGGAGATGAGGGTAGCAATCTGGTAATGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTCTTTGGTGATGCTTGCGACTGGGGTAGGAATCAGCCTGGTCGTGGTGGTCTAGCAGTGGCTCTGTGCAGAAGCTTTGCGGCGGCGTGGCAAGTCGGAGGTGGTGGTGGTCTGGACGCTAGGGTGTCCTCATCAATTAGCACCATCTGGGCCGCGTTGGGCCAGAACTATAACCCCAACATTTGGCTCGATGTAGAGTTGGCTTGGAGGACTCGGAGCATGAAGAAGGAATGGAAGGTGATTCAGTATTTTGGGCTCGCTGTGGTGAATCTTCTAGTGAACTTGTTGCTACTGAAGCATCCAAAGAGACTAAGATTGCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

9.78

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 315
AccII CGCG 1 cut(s) 287
AciI CCGC 3 cut(s) 212, 215, 285
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 176, 315
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 207, 455
AluI AGCT 2 cut(s) 207, 455
Alw26I GTCTC 2 cut(s) 38, 433
AoxI GGCC 3 cut(s) 61, 282, 292
ApoI RAATTY 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 282, 292
AsuHPI GGTGA 5 cut(s) 115, 125, 152, 382, 409
BanII GRGCYC 1 cut(s) 390
BccI CCATC 2 cut(s) 104, 284
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 38, 433
BfaI CTAG 3 cut(s) 185, 252, 407
BisI GCNGC 3 cut(s) 213, 216, 285
BlsI GCNGC 3 cut(s) 214, 217, 286
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 282, 292
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 3 cut(s) 18, 133, 439
BmuI ACTGGG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 315
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 115, 430
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 176, 315
BseNI ACTGG 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 3 cut(s) 63, 284, 294
BslI CCNNNNNNNGG 2 cut(s) 176, 315
BsmAI GTCTC 2 cut(s) 38, 433
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 3 cut(s) 63, 284, 294
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 212, 215, 285
BspANI GGCC 3 cut(s) 63, 284, 294
BspFNI CGCG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 158
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 148, 390, 453
BstDEI CTNAG 2 cut(s) 443, 456
BstF5I GGATG 2 cut(s) 115, 430
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 38, 433
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 128, 427
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 63, 284, 294
BtsCI GGATG 2 cut(s) 115, 430
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 148, 390, 453
Cfr13I GGNCC 2 cut(s) 282, 292
CseI GACGC 2 cut(s) 20, 257
CviAII CATG 1 cut(s) 352
DdeI CTNAG 2 cut(s) 443, 456
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 355
FaiI YATR 2 cut(s) 303, 353
FatI CATG 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 213, 216, 285
FokI GGATG 2 cut(s) 122, 417
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 213, 216, 285
FspBI CTAG 3 cut(s) 185, 252, 407
GluI GCNGC 3 cut(s) 213, 216, 285
HaeIII GGCC 3 cut(s) 63, 284, 294
HgaI GACGC 2 cut(s) 20, 257
Hin1II CATG 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 205, 453
HinfI GANTC 4 cut(s) 163, 343, 373, 400
HphI GGTGA 5 cut(s) 115, 125, 152, 382, 409
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 27, 230, 348
Hpy188III TCNNGA 2 cut(s) 35, 245
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 13, 100, 352, 361
HpyCH4V TGCA 2 cut(s) 201, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 427
HpyF3I CTNAG 2 cut(s) 443, 456
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 8 cut(s) 80, 104, 139, 156, 183, 230, 265, 308
LweI GCATC 3 cut(s) 18, 133, 439
MaeI CTAG 3 cut(s) 185, 252, 407
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 367, 395
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 41, 267
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 4 cut(s) 76, 224, 271, 333
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 128, 427
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 355
PfeI GAWTC 3 cut(s) 163, 373, 400
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 3 cut(s) 214, 217, 286
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 2 cut(s) 282, 292
SatI GCNGC 3 cut(s) 213, 216, 285
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 282, 292
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 390
SetI ASST 4 cut(s) 209, 235, 372, 457
SfaNI GCATC 3 cut(s) 18, 133, 439
Sse9I AATT 2 cut(s) 41, 267
SsiI CCGC 3 cut(s) 212, 215, 285
SspMI CTAG 3 cut(s) 185, 252, 407
StyD4I CCNGG 1 cut(s) 169
TaqI TCGA 3 cut(s) 36, 124, 321
TasI AATT 2 cut(s) 41, 267
TauI GCSGC 3 cut(s) 215, 218, 287
TfiI GAWTC 3 cut(s) 163, 373, 400
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 315
XapI RAATTY 1 cut(s) 41
XspI CTAG 3 cut(s) 185, 252, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.