Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

58270729 .. 58271001

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGGAGGTCAACAAAACCAAGAAGAGCAACAAGGAGAAATTCAACGTGAAAATGAGAGGCCTGGCTTGCCTAACTCTGCGAAAGGAGGTCGACCGCAACAGTAACCCTAGCATAACTACTGATGAAGAGATTATTGGTTCCAATCAGGAAGAGGTTTATGGCCAGCTCGATGTGTACGAGTACGAAGAGGCAGTGCCGGAGGAGCAGTCCAAGAAAAACCGCCGGTTTGCTGACCTGGTCAATCCTGAGTACGAGCTACGTACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp14

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

5.08

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	3 cut(s)	5, 97, 223
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	4 cut(s)	179, 185, 254, 265
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	63, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	169, 259
AluI	AGCT	2 cut(s)	169, 259
AoxI	GGCC	2 cut(s)	61, 163
ApoI	RAATTY	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	65, 239
BfaI	CTAG	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	65, 239
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	65, 239
BsaAI	YACGTR	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bse118I	RCCGGY	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	65, 239
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	63, 165
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	200, 226
BsnI	GGCC	2 cut(s)	63, 165
BspACI	CCGC	3 cut(s)	5, 97, 223
BspANI	GGCC	2 cut(s)	63, 165
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	65, 239
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	4 cut(s)	20, 123, 147, 183
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	70, 167
BstDEI	CTNAG	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 205
BstNI	CCWGG	2 cut(s)	65, 239
BstSCI	CCNGG	2 cut(s)	63, 237
BstSNI	TACGTA	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	63, 165
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	70, 167
CciI	TCATGA	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	237
Csp6I	GTAC	4 cut(s)	178, 184, 253, 264
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	5 cut(s)	63, 68, 165, 169, 259
CviKI_1	RGCY	5 cut(s)	63, 68, 165, 169, 259
CviQI	GTAC	4 cut(s)	178, 184, 253, 264
DdeI	CTNAG	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	4 cut(s)	20, 123, 147, 183
EarI	CTCTTC	4 cut(s)	20, 123, 147, 183
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	63, 237
FaeI	CATG	1 cut(s)	273
FaiI	YATR	3 cut(s)	116, 162, 271
FatI	CATG	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	63, 165
HapII	CCGG	2 cut(s)	200, 226
Hin1II	CATG	1 cut(s)	273
HincII	GTYRAC	2 cut(s)	13, 94
HindII	GTYRAC	2 cut(s)	13, 94
HpaII	CCGG	2 cut(s)	200, 226
Hpy166II	GTNNAC	3 cut(s)	13, 94, 178
Hpy188III	TCNNGA	3 cut(s)	149, 248, 270
Hpy8I	GTNNAC	3 cut(s)	13, 94, 178
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	2 cut(s)	48, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 205
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	2 cut(s)	48, 262
Hsp92II	CATG	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	50, 77, 134, 179, 213, 224, 239, 251, 261
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	48, 262
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	4 cut(s)	37, 140, 164, 200
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	165
MnlI	CCTC	5 cut(s)	53, 82, 148, 184, 196
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	2 cut(s)	200, 226
MspR9I	CCNGG	2 cut(s)	65, 239
MvaI	CCWGG	2 cut(s)	65, 239
MwoI	GCNNNNNNNGC	2 cut(s)	69, 205
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	63, 237
PspGI	CCWGG	2 cut(s)	63, 237
PspN4I	GGNNCC	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	4 cut(s)	179, 185, 254, 265
RsaNI	GTAC	4 cut(s)	178, 184, 253, 264
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	65, 239
SetI	ASST	9 cut(s)	12, 51, 93, 159, 171, 240, 261, 265, 269
SexAI	ACCWGGT	1 cut(s)	237
SnaBI	TACGTA	1 cut(s)	263
Sse9I	AATT	1 cut(s)	41
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	3 cut(s)	5, 97, 223
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	63, 237
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	2 cut(s)	51, 265
TaqI	TCGA	2 cut(s)	93, 171
TasI	AATT	1 cut(s)	41
TscAI	CASTG	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.