RLG00000032830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000535
Physical Location & Seq
Reverse (-)
19521700 .. 19522125
426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032830

Sequence Viewer

Length: 336 bp
ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTGCGTTGTTCTTGGGCGCACTATTGAATGCTATTCTTTGTTTTTTCTCCTCCTTATGCTTGATAGAATCGATCCTTGGAGGTGGAGAGGGTTTCTGGGCATGGAGACTCTGATGCATCTCGACAGATGGCTGGTTGGTTTTGGAAATGAGGGCAGCAATCTGGTAATGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTCTTTGGTGATGCTCACGGCTGGGGTGGGAATCAGCCTGGTTGTGGTGGTCTAGCAGTGGCTCTGTGCAGAAGCTTTGCGGCGGCGTGGCAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.22

Weight (kDa)

6.02

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 317, 320
AclWI GGATC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 220, 230, 257
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 159, 209
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 290
BisI GCNGC 3 cut(s) 193, 318, 321
BlsI GCNGC 3 cut(s) 194, 319, 322
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 3 cut(s) 141, 163, 238
BpmI CTGGAG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 325
BshVI ATCGAT 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 109, 220
BspACI CCGC 2 cut(s) 317, 320
BspDI ATCGAT 1 cut(s) 108
BspPI GGATC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 109, 220
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 2 cut(s) 112, 223
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 109, 220
BstMWI GCNNNNNNNGC 2 cut(s) 39, 233
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 108
CviAII CATG 1 cut(s) 139
CviJI RGCY 7 cut(s) 5, 169, 227, 258, 274, 299, 312
CviKI_1 RGCY 7 cut(s) 5, 169, 227, 258, 274, 299, 312
DpnI GATC 2 cut(s) 111, 222
DpnII GATC 2 cut(s) 109, 220
Eco130I CCWWGG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 95, 140
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 193, 318, 321
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 193, 318, 321
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 193, 318, 321
GsaI CCCAGC 1 cut(s) 262
GsuI CTGGAG 1 cut(s) 13
HhaI GCGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 3 cut(s) 105, 145, 268
HphI GGTGA 3 cut(s) 220, 230, 257
Hpy188I TCNGA 2 cut(s) 150, 335
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 33, 205
HpyCH4V TGCA 2 cut(s) 154, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 233
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 109, 220
LpnPI CCDG 9 cut(s) 43, 52, 119, 155, 185, 209, 244, 261, 288
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 3 cut(s) 141, 163, 238
MaeI CTAG 1 cut(s) 290
MalI GATC 2 cut(s) 111, 222
MboI GATC 2 cut(s) 109, 220
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 5 cut(s) 37, 98, 111, 119, 181
Mph1103I ATGCAT 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 39, 233
NdeII GATC 2 cut(s) 109, 220
NlaIII CATG 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 156
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 105, 268
PkrI GCNGC 3 cut(s) 194, 319, 322
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 274
SatI GCNGC 3 cut(s) 193, 318, 321
Sau3AI GATC 2 cut(s) 109, 220
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 276
SetI ASST 2 cut(s) 122, 314
SfaNI GCATC 3 cut(s) 141, 163, 238
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 317, 320
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 113
TaqI TCGA 3 cut(s) 108, 159, 229
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 320, 323
TfiI GAWTC 2 cut(s) 105, 268
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 192
TspRI CASTG 1 cut(s) 300
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.