Rw7G009110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000535
Physical Location & Seq
Forward (+)
8570075 .. 8572034
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009110.1

Sequence Viewer

Length: 957 bp
ATGAAAACCCTAGCACTCCCAGCGACGCTTCTCGTGCTAACACTAGTGTTGCCTTCTTGTGGCAGCGACGAACACAGCGGCTCCGACCGACTTCCAAACCCAGGGCATGTCTGTTCGGGTCCTTTTCTATCGTTCAATCCATCCAATTGGGTACTATCTCATCTACACCTCTCAAGCTCTACCACTGATGTCCATGGCGGCGGCGTGAAGGATTCAAAGTATTGGCAATTTGATTGGCCTAATGATCATCATGGGGTTGTCTGGTGGGGTCCAGATCAGGGAGACGGCCTGAATCCAAGTCGAGAGGGTGGCCAGATTCGCTGTGTGACTGGCGTGATGGTTCCCTACGAGGCTGAGATGGAGGTGACGCCACTTCTGGCACTGCCTTGCAATGTTGTTCGGGGTCAAAATCTCAATGGATCAAATTTGGAACAACTTTGGGCATTATTGCTTCTGTTTGAAATTGTCTCTGAACTGATGGCAGTACCCTTGCTATGGCCTGAATCTCGACGGCTCAATTCTTGCCTGGATGATCCTATCTCTGGGTTTGGCACATCGGGTTTTATACGGAGTAGGGTACTTGGGGCAATTGGAGGTGCACTACAAGTGCTATGCAGCAGCGCTAGTGGGGCTGCAACTATGTTGAGGATGACGGCGGTGATCGGCGACGCTGTTAAGCTGACTATCAGTGGTCGGCTTTCAAAGGCTTGGGTGCCCATAGTAACTGGGGTGTCCAATGTTATGTCAAAATGGGATTTTGTTTGGGCCCAGATGCTCGGCCTAACCACCACACTTTCCGAGGCGCTGTGGCACACCAAACCGGTTGGCAGCGCACGCCGCCGACACCACGTCGCTGCGCCATCCCCACATCGCTGTGCCATAGCCCTGCACCACATCGAGCACCGATCCACCAACCCAGGGCCGCATCCCTGCCTAAAAGCCATGCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

34.3

Weight (kDa)

7.25

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 712
AciI CCGC 6 cut(s) 78, 198, 201, 656, 838, 923
AclWI GGATC 3 cut(s) 427, 527, 900
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 3 cut(s) 153, 486, 579
AfeI AGCGCT 1 cut(s) 622
AfiI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 918
AgeI ACCGGT 1 cut(s) 820
AgsI TTSAA 4 cut(s) 136, 216, 461, 702
AhdI GACNNNNNGTC 1 cut(s) 848
AhlI ACTAGT 1 cut(s) 43
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 3 cut(s) 100, 525, 916
AluBI AGCT 2 cut(s) 177, 679
AluI AGCT 2 cut(s) 177, 679
Alw21I GWGCWC 2 cut(s) 601, 903
Alw26I GTCTC 2 cut(s) 276, 472
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 3 cut(s) 427, 527, 900
Aor51HI AGCGCT 1 cut(s) 622
AoxI GGCC 7 cut(s) 236, 286, 310, 497, 765, 778, 920
ApaI GGGCCC 1 cut(s) 769
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 6 cut(s) 63, 615, 618, 632, 828, 854
ApoI RAATTY 1 cut(s) 424
AsiGI ACCGGT 1 cut(s) 820
AspLEI GCGC 4 cut(s) 623, 805, 833, 859
AspS9I GGNCC 5 cut(s) 119, 269, 765, 766, 920
AsuHPI GGTGA 2 cut(s) 376, 670
AvaII GGWCC 2 cut(s) 119, 269
BaeGI GKGCMC 3 cut(s) 601, 717, 769
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 2 cut(s) 601, 903
BbvI GCAGC 6 cut(s) 75, 619, 627, 630, 840, 841
BccI CCATC 5 cut(s) 148, 331, 352, 472, 868
BceAI ACGGC 3 cut(s) 301, 527, 669
BciT130I CCWGG 3 cut(s) 102, 527, 918
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 276, 472
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 3 cut(s) 11, 44, 624
BfoI RGCGCY 2 cut(s) 624, 806
Bme1390I CCNGG 3 cut(s) 102, 527, 918
Bme18I GGWCC 2 cut(s) 119, 269
BmeRI GACNNNNNGTC 1 cut(s) 848
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 5 cut(s) 119, 269, 765, 766, 920
BmiI GGNNCC 6 cut(s) 82, 120, 270, 342, 714, 767
BmrFI CCNGG 3 cut(s) 102, 527, 918
BmrI ACTGGG 1 cut(s) 735
BmsI GCATC 2 cut(s) 762, 934
BmuI ACTGGG 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 6 cut(s) 100, 101, 193, 798, 916, 917
BsaWI WCCGGW 1 cut(s) 820
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 918
Bse118I RCCGGY 1 cut(s) 820
Bse1I ACTGG 3 cut(s) 334, 730, 947
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 3 cut(s) 102, 527, 918
BseDI CCNNGG 6 cut(s) 100, 101, 193, 798, 916, 917
BseGI GGATG 5 cut(s) 140, 535, 654, 860, 925
BseLI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 918
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 334, 730, 947
BseSI GKGCMC 3 cut(s) 601, 717, 769
BseXI GCAGC 6 cut(s) 75, 619, 627, 630, 840, 841
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 7 cut(s) 238, 288, 312, 499, 767, 780, 922
BshNI GGYRCC 1 cut(s) 712
BshTI ACCGGT 1 cut(s) 820
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 601, 903
BsiSI CCGG 1 cut(s) 821
BslI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 918
BsmAI GTCTC 2 cut(s) 276, 472
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 7 cut(s) 238, 288, 312, 499, 767, 780, 922
Bsp120I GGGCCC 1 cut(s) 765
Bsp1286I GDGCHC 4 cut(s) 601, 717, 769, 903
Bsp143I GATC 6 cut(s) 244, 274, 419, 532, 660, 905
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 6 cut(s) 78, 198, 201, 656, 838, 923
BspANI GGCC 7 cut(s) 238, 288, 312, 499, 767, 780, 922
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 6 cut(s) 82, 120, 270, 342, 714, 767
BspPI GGATC 3 cut(s) 427, 527, 900
BspT107I GGYRCC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 820
BsrI ACTGG 3 cut(s) 334, 730, 947
BssAI RCCGGY 1 cut(s) 820
BssECI CCNNGG 6 cut(s) 100, 101, 193, 798, 916, 917
BssMI GATC 6 cut(s) 244, 274, 419, 532, 660, 905
BssNI GRCGYC 1 cut(s) 368
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 102, 527, 918
BstACI GRCGYC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 5 cut(s) 140, 535, 654, 860, 925
BstH2I RGCGCY 2 cut(s) 624, 806
BstHHI GCGC 4 cut(s) 623, 805, 833, 859
BstKTI GATC 6 cut(s) 247, 277, 422, 535, 663, 908
BstMAI GTCTC 2 cut(s) 276, 472
BstMBI GATC 6 cut(s) 244, 274, 419, 532, 660, 905
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 20, 34, 318, 629, 834, 837
BstNI CCWGG 3 cut(s) 102, 527, 918
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 100, 525, 916
BstSLI GKGCMC 3 cut(s) 601, 717, 769
BstV1I GCAGC 6 cut(s) 75, 619, 627, 630, 840, 841
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuRI GGCC 7 cut(s) 238, 288, 312, 499, 767, 780, 922
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 854
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 5 cut(s) 140, 535, 654, 860, 925
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 3 cut(s) 183, 380, 694
Cac8I GCNNGC 1 cut(s) 835
CfoI GCGC 4 cut(s) 623, 805, 833, 859
Cfr10I RCCGGY 1 cut(s) 820
Cfr13I GGNCC 5 cut(s) 119, 269, 765, 766, 920
CseI GACGC 3 cut(s) 34, 376, 677
Csp6I GTAC 3 cut(s) 152, 485, 578
CspAI ACCGGT 1 cut(s) 820
CviAII CATG 4 cut(s) 107, 194, 251, 943
CviQI GTAC 3 cut(s) 152, 485, 578
DdeI CTNAG 1 cut(s) 354
DpnI GATC 6 cut(s) 246, 276, 421, 534, 662, 907
DpnII GATC 6 cut(s) 244, 274, 419, 532, 660, 905
DriI GACNNNNNGTC 1 cut(s) 848
EaeI YGGCCR 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 119, 269
Eco47III AGCGCT 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 3 cut(s) 100, 525, 916
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 4 cut(s) 110, 197, 254, 946
FatI CATG 4 cut(s) 106, 193, 250, 942
FbaI TGATCA 1 cut(s) 244
FokI GGATG 5 cut(s) 127, 542, 661, 847, 912
FriOI GRGCYC 1 cut(s) 769
FspBI CTAG 3 cut(s) 11, 44, 624
GlaI GCGC 4 cut(s) 622, 804, 832, 858
GsaI CCCAGC 1 cut(s) 23
HaeII RGCGCY 2 cut(s) 624, 806
HaeIII GGCC 7 cut(s) 238, 288, 312, 499, 767, 780, 922
HapII CCGG 1 cut(s) 821
HgaI GACGC 3 cut(s) 34, 376, 677
HhaI GCGC 4 cut(s) 623, 805, 833, 859
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 4 cut(s) 110, 197, 254, 946
Hin6I GCGC 4 cut(s) 621, 803, 831, 857
HinP1I GCGC 4 cut(s) 621, 803, 831, 857
HinfI GANTC 4 cut(s) 212, 292, 316, 503
HpaII CCGG 1 cut(s) 821
HphI GGTGA 2 cut(s) 376, 670
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 3 cut(s) 85, 472, 799
Hpy188III TCNNGA 3 cut(s) 272, 302, 507
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 5 cut(s) 28, 71, 513, 671, 854
HpyAV CCTTC 2 cut(s) 63, 202
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 5 cut(s) 390, 599, 615, 635, 889
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 34, 318, 629, 834, 837
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 849
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 4 cut(s) 110, 197, 254, 946
HspAI GCGC 4 cut(s) 621, 803, 831, 857
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 6 cut(s) 244, 274, 419, 532, 660, 905
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 6 cut(s) 75, 619, 627, 630, 840, 841
LweI GCATC 2 cut(s) 762, 934
MaeI CTAG 3 cut(s) 11, 44, 624
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 3 cut(s) 325, 364, 721
MalI GATC 6 cut(s) 246, 276, 421, 534, 662, 907
MboI GATC 6 cut(s) 244, 274, 419, 532, 660, 905
MfeI CAATTG 2 cut(s) 145, 588
MhlI GDGCHC 4 cut(s) 601, 717, 769, 903
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 6 cut(s) 145, 227, 424, 462, 517, 588
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 179, 298, 343, 355, 587, 639, 793
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 1 cut(s) 873
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 3 cut(s) 102, 527, 918
MunI CAATTG 2 cut(s) 145, 588
MvaI CCWGG 3 cut(s) 102, 527, 918
MwoI GCNNNNNNNGC 6 cut(s) 20, 34, 318, 629, 834, 837
NcoI CCATGG 1 cut(s) 193
NdeII GATC 6 cut(s) 244, 274, 419, 532, 660, 905
NlaIII CATG 4 cut(s) 110, 197, 254, 946
NlaIV GGNNCC 6 cut(s) 82, 120, 270, 342, 714, 767
NmeAIII GCCGAG 1 cut(s) 756
NmuCI GTSAC 2 cut(s) 325, 364
NspI RCATGY 1 cut(s) 110
PasI CCCWGGG 2 cut(s) 101, 917
PfeI GAWTC 4 cut(s) 212, 292, 316, 503
PinAI ACCGGT 1 cut(s) 820
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 100, 525, 916
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 3 cut(s) 100, 525, 916
PspN4I GGNNCC 6 cut(s) 82, 120, 270, 342, 714, 767
PspOMI GGGCCC 1 cut(s) 765
PspPI GGNCC 5 cut(s) 119, 269, 765, 766, 920
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 153, 486, 579
RsaNI GTAC 3 cut(s) 152, 485, 578
RseI CAYNNNNRTG 1 cut(s) 873
SaqAI TTAA 1 cut(s) 675
Sau3AI GATC 6 cut(s) 244, 274, 419, 532, 660, 905
Sau96I GGNCC 5 cut(s) 119, 269, 765, 766, 920
ScrFI CCNGG 3 cut(s) 102, 527, 918
SduI GDGCHC 4 cut(s) 601, 717, 769, 903
SetI ASST 6 cut(s) 171, 179, 366, 598, 681, 852
SfaNI GCATC 2 cut(s) 762, 934
SinI GGWCC 2 cut(s) 119, 269
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 6 cut(s) 145, 227, 424, 462, 517, 588
SsiI CCGC 6 cut(s) 78, 198, 201, 656, 838, 923
SspMI CTAG 3 cut(s) 11, 44, 624
StyD4I CCNGG 3 cut(s) 100, 525, 916
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 852
TaqI TCGA 3 cut(s) 301, 508, 897
TaqII GACCGA 1 cut(s) 102
TasI AATT 6 cut(s) 145, 227, 424, 462, 517, 588
TauI GCSGC 5 cut(s) 81, 201, 204, 840, 925
TfiI GAWTC 4 cut(s) 212, 292, 316, 503
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 3 cut(s) 190, 387, 694
TseFI GTSAC 2 cut(s) 325, 364
TseI GCWGC 6 cut(s) 63, 615, 618, 632, 828, 854
Tsp45I GTSAC 2 cut(s) 325, 364
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 3 cut(s) 190, 387, 694
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 2 cut(s) 119, 269
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 110
XspI CTAG 3 cut(s) 11, 44, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.