RLG00000010796

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000535
Physical Location & Seq
Forward (+)
4413580 .. 4414325
746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010796

Sequence Viewer

Length: 492 bp
ATGGCTCTTGCCACAATTGACCCTTCCTCCGGCGTCTTTGGTGGAGGACTTTTAGATTCAAGTTTGGATCTGACTTTGGATCCTTATAAGTTGGGTGAAGGTGGTACTGTGATAGCAGGATCGATCCTTGGAGATGGAGAGGGTTTCTACCCTCTGATGTTCGCTTTGGCAGTGGCGCACAAATCTGGCAACGATTTGCTGATGGTGAAAGACGGTGGTATGGCTCGATCTGCTTTCGTTGGTGATGTCGGCGTCTGGGATAGGCATTGGTTTGGTCGTGGTAACCTAGTAGTGGCTCTATGCTGGAGCTTTGCAGCGAGGAAGCAAGTCGGAGGTGGTGGTGGGGTGCCCTTAGTACTTCTTGGGATGCTCTTCGTAATTGCCATGTGGGCTGGGGCTCTGTGGGCTAATGCTTACTGGTGGGTCAGCGGGGCTTGCATAAGCTGGGAGGGGATGGAAGGTGACCTGTCATCTTCCATTCCTAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.02

Weight (kDa)

4.58

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 1 cut(s) 429
AclWI GGATC 5 cut(s) 74, 75, 87, 118, 127
AcyI GRCGYC 2 cut(s) 33, 252
AfaI GTAC 2 cut(s) 106, 357
AfiI CCNNNNNNNGG 2 cut(s) 29, 292
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 2 cut(s) 309, 444
AluI AGCT 2 cut(s) 309, 444
AlwI GGATC 5 cut(s) 74, 75, 87, 118, 127
ApeKI GCWGC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 4 cut(s) 107, 217, 254, 473
BaeGI GKGCMC 1 cut(s) 351
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 326
BccI CCATC 3 cut(s) 128, 196, 448
BfaI CTAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 81, 348
BmsI GCATC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 33, 252
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 292
Bse1I ACTGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 372, 459
BseLI CCNNNNNNNGG 2 cut(s) 29, 292
BseNI ACTGG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 2 cut(s) 392, 444
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 122
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 29, 292
Bsp1286I GDGCHC 2 cut(s) 351, 400
Bsp143I GATC 5 cut(s) 67, 79, 119, 123, 227
BspACI CCGC 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 81, 348
BspPI GGATC 5 cut(s) 74, 75, 87, 118, 127
BspQI GCTCTTC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 5 cut(s) 67, 79, 119, 123, 227
BssNI GRCGYC 2 cut(s) 33, 252
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 109, 215
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 2 cut(s) 33, 252
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 352
BstEII GGTNACC 2 cut(s) 281, 461
BstF5I GGATG 2 cut(s) 372, 459
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 70, 82, 122, 126, 230
BstMBI GATC 5 cut(s) 67, 79, 119, 123, 227
BstMWI GCNNNNNNNGC 4 cut(s) 230, 389, 404, 435
BstPI GGTNACC 2 cut(s) 281, 461
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 67, 79
BstYI RGATCY 2 cut(s) 67, 79
Bsu15I ATCGAT 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 122
BtsCI GGATG 2 cut(s) 372, 459
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 2 cut(s) 22, 241
Csp6I GTAC 2 cut(s) 105, 356
CviAII CATG 1 cut(s) 385
CviJI RGCY 9 cut(s) 5, 224, 296, 309, 392, 398, 407, 434, 444
CviKI_1 RGCY 9 cut(s) 5, 224, 296, 309, 392, 398, 407, 434, 444
CviQI GTAC 2 cut(s) 105, 356
DdeI CTNAG 1 cut(s) 352
DpnI GATC 5 cut(s) 69, 81, 121, 125, 229
DpnII GATC 5 cut(s) 67, 79, 119, 123, 227
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 400
Eco91I GGTNACC 2 cut(s) 281, 461
EcoO65I GGTNACC 2 cut(s) 281, 461
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 388
FaiI YATR 5 cut(s) 87, 221, 301, 386, 440
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 379, 466
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 2 cut(s) 396, 448
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 1 cut(s) 30
HgaI GACGC 2 cut(s) 22, 241
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 2 cut(s) 33, 252
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 30
HphI GGTGA 4 cut(s) 107, 217, 254, 473
Hpy188I TCNGA 3 cut(s) 72, 156, 332
HpyAV CCTTC 3 cut(s) 33, 92, 452
HpyCH4III ACNGT 2 cut(s) 109, 215
HpyCH4V TGCA 2 cut(s) 314, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 389, 404, 435
HpyF3I CTNAG 1 cut(s) 352
Hsp92I GRCGYC 2 cut(s) 33, 252
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 5 cut(s) 67, 79, 119, 123, 227
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 9 cut(s) 43, 102, 171, 241, 289, 378, 403, 430, 479
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 281, 461
MalI GATC 5 cut(s) 69, 81, 121, 125, 229
MboI GATC 5 cut(s) 67, 79, 119, 123, 227
MboII GAAGA 2 cut(s) 364, 465
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 67, 79
MhlI GDGCHC 2 cut(s) 351, 400
MluCI AATT 3 cut(s) 15, 378, 484
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 7 cut(s) 37, 38, 133, 162, 312, 326, 442
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 230, 389, 404, 435
NdeII GATC 5 cut(s) 67, 79, 119, 123, 227
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 81, 348
NmuCI GTSAC 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 316
PsiI TTATAA 1 cut(s) 87
PspEI GGTNACC 2 cut(s) 281, 461
PspFI CCCAGC 2 cut(s) 392, 444
PspN4I GGNNCC 2 cut(s) 81, 348
PsuI RGATCY 2 cut(s) 67, 79
RsaI GTAC 2 cut(s) 106, 357
RsaNI GTAC 2 cut(s) 105, 356
SapI GCTCTTC 1 cut(s) 377
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 5 cut(s) 67, 79, 119, 123, 227
ScaI AGTACT 1 cut(s) 357
SduI GDGCHC 2 cut(s) 351, 400
SetI ASST 7 cut(s) 103, 288, 311, 337, 446, 463, 468
SfaNI GCATC 1 cut(s) 357
Sse9I AATT 3 cut(s) 15, 378, 484
SsiI CCGC 1 cut(s) 429
SspMI CTAG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 109, 215
TaqI TCGA 2 cut(s) 122, 226
TasI AATT 3 cut(s) 15, 378, 484
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 461
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.