Rh5CG046700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000535
Physical Location & Seq
Forward (+)
3292138 .. 3292770
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG046700.1

Sequence Viewer

Length: 633 bp
ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCGTGTCATGCTTTGCTTTAGGGTGTGCTGCAGGTCGTTTCTCTTTGCTTTTCCTTCTCCTTGGACTCTCTATTAGCGGTTTTGATGGAGGACTTTTTGATTTGGGATTGGCTCTTTCTTTGATTCCTGATGGGTCGGGTGATGGAGGTTCTGGGGATAACGCAATTGCTCCTTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAATGGCAGCCTAATAACCTGCTTGAGCCTAGAGCATCATCGAGGGCCAGTCGCGGCTGCTGCTGTTGGAGTTGATGGCGGCAATCTGGTGTTGGTGAAGGACGGCGCTCTGGCTTCGTCTGGGAGTGGTCTGTGTCAGCTTGGTCGTGGTGGCTTGTTGGTGGACTGGTACCAGTGCTTTACGGCGGCGGCGCGGGATGGAGGTGGTGGTTATGCAGGTATCACCCACTGGGCCGCGTTAGATCGGAGCTCTAACTCTAGCGTTTGGTCTCCTGGCTTTGGGCTTTTTGGGCTCAGGTTTCTTTGGGTGTGGGTTGGCCCTATGCTTTGGGGCTGCTGGATTAGGGTGTCTTGGGCCCTAACTACATGTTGCTTTGTTTTTTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

21.86

Weight (kDa)

7.56

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 53, 269, 449
Acc65I GGTACC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 411
AccII CGCG 4 cut(s) 240, 296, 436, 479
AciI CCGC 7 cut(s) 108, 296, 321, 428, 431, 436, 477
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 29, 521
AflIII ACRYGT 1 cut(s) 608
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 2 cut(s) 382, 492
AluI AGCT 2 cut(s) 382, 492
Alw21I GWGCWC 1 cut(s) 494
Alw26I GTCTC 1 cut(s) 516
AoxI GGCC 4 cut(s) 287, 474, 559, 597
ApaI GGGCCC 1 cut(s) 601
ApeKI GCWGC 5 cut(s) 59, 249, 299, 302, 576
Asp718I GGTACC 1 cut(s) 411
AspLEI GCGC 2 cut(s) 350, 436
AspS9I GGNCC 5 cut(s) 287, 474, 560, 597, 598
AsuHPI GGTGA 3 cut(s) 182, 349, 457
BaeGI GKGCMC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 3 cut(s) 494, 537, 601
Bbv12I GWGCWC 1 cut(s) 494
BbvI GCAGC 5 cut(s) 46, 261, 286, 289, 563
BccI CCATC 5 cut(s) 110, 155, 167, 311, 434
BceAI ACGGC 2 cut(s) 361, 441
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 272, 501
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 3 cut(s) 53, 269, 449
Bme1390I CCNGG 1 cut(s) 516
BmgT120I GGNCC 5 cut(s) 287, 474, 560, 597, 598
BmiI GGNNCC 2 cut(s) 413, 599
BmrFI CCNGG 1 cut(s) 516
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 91, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 521
Bse1I ACTGG 4 cut(s) 290, 413, 415, 476
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 91, 203
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 29, 521
BseMII CTCAG 1 cut(s) 550
BseNI ACTGG 4 cut(s) 290, 413, 415, 476
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 5 cut(s) 46, 261, 286, 289, 563
Bsh1236I CGCG 4 cut(s) 240, 296, 436, 479
BshFI GGCC 4 cut(s) 289, 476, 561, 599
BshNI GGYRCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 494
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 29, 521
BsmAI GTCTC 1 cut(s) 516
BsnI GGCC 4 cut(s) 289, 476, 561, 599
Bso31I GGTCTC 1 cut(s) 516
Bsp120I GGGCCC 1 cut(s) 597
Bsp1286I GDGCHC 3 cut(s) 494, 537, 601
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 7 cut(s) 108, 296, 321, 428, 431, 436, 477
BspANI GGCC 4 cut(s) 289, 476, 561, 599
BspCNI CTCAG 1 cut(s) 549
BspFNI CGCG 4 cut(s) 240, 296, 436, 479
BspLI GGNNCC 2 cut(s) 413, 599
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 3 cut(s) 53, 269, 449
BspT107I GGYRCC 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 516
BsrI ACTGG 4 cut(s) 290, 413, 415, 476
BssECI CCNNGG 2 cut(s) 91, 203
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 2 cut(s) 91, 203
Bst2UI CCWGG 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 4 cut(s) 240, 296, 436, 479
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 2 cut(s) 350, 436
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 532
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 4 cut(s) 240, 296, 436, 479
BstV1I GCAGC 5 cut(s) 46, 261, 286, 289, 563
BsuRI GGCC 4 cut(s) 289, 476, 561, 599
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 422, 469
BveI ACCTGC 3 cut(s) 53, 269, 449
CfoI GCGC 2 cut(s) 350, 436
Cfr13I GGNCC 5 cut(s) 287, 474, 560, 597, 598
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 39, 609
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 536
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 91, 203
Eco24I GRGCYC 3 cut(s) 494, 537, 601
Eco31I GGTCTC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 91, 203
EcoT38I GRGCYC 3 cut(s) 494, 537, 601
ErhI CCWWGG 2 cut(s) 91, 203
FaeI CATG 2 cut(s) 42, 612
FaiI YATR 4 cut(s) 40, 456, 566, 610
FatI CATG 2 cut(s) 38, 608
FauI CCCGC 1 cut(s) 429
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 3 cut(s) 494, 537, 601
FspBI CTAG 2 cut(s) 272, 501
GlaI GCGC 2 cut(s) 349, 435
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 4 cut(s) 289, 476, 561, 599
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 229
HhaI GCGC 2 cut(s) 350, 436
Hin1II CATG 2 cut(s) 42, 612
Hin6I GCGC 2 cut(s) 348, 434
HinP1I GCGC 2 cut(s) 348, 434
HinfI GANTC 2 cut(s) 96, 154
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 182, 349, 457
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 489, 629
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 3 cut(s) 34, 95, 334
HpyCH4V TGCA 2 cut(s) 62, 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 532
HpyF3I CTNAG 1 cut(s) 536
Hsp92II CATG 2 cut(s) 42, 612
HspAI GCGC 2 cut(s) 348, 434
KpnI GGTACC 1 cut(s) 415
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 205, 489
Lsp1109I GCAGC 5 cut(s) 46, 261, 286, 289, 563
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 272, 501
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 494, 537, 601
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 7 cut(s) 113, 170, 201, 207, 238, 278, 437
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 4 cut(s) 240, 296, 436, 479
MwoI GCNNNNNNNGC 4 cut(s) 39, 246, 302, 532
NdeII GATC 1 cut(s) 484
NlaIII CATG 2 cut(s) 42, 612
NlaIV GGNNCC 2 cut(s) 413, 599
NspI RCATGY 1 cut(s) 612
PciI ACATGT 1 cut(s) 608
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PscI ACATGT 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 413, 599
PspOMI GGGCCC 1 cut(s) 597
PspPI GGNCC 5 cut(s) 287, 474, 560, 597, 598
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 1 cut(s) 494
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 5 cut(s) 287, 474, 560, 597, 598
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 3 cut(s) 494, 537, 601
SetI ASST 9 cut(s) 67, 181, 212, 263, 384, 448, 463, 494, 542
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 195
SsiI CCGC 7 cut(s) 108, 296, 321, 428, 431, 436, 477
SspMI CTAG 2 cut(s) 272, 501
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 2 cut(s) 91, 203
TaqI TCGA 1 cut(s) 283
TasI AATT 1 cut(s) 195
TauI GCSGC 5 cut(s) 299, 324, 431, 434, 479
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 2 cut(s) 422, 476
TseI GCWGC 5 cut(s) 59, 249, 299, 302, 576
TspRI CASTG 2 cut(s) 422, 476
XceI RCATGY 1 cut(s) 612
XspI CTAG 2 cut(s) 272, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.