RLG00000014825

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000535
Physical Location & Seq
Forward (+)
58052054 .. 58054040
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014825

Sequence Viewer

Length: 477 bp
ATGGTGAAGGATGGAGATCTGACTCGATTTGCTTTCTTTGGTGATGCTCGCAGCTGGGGTGGGAATCAGCCTGGTCATGGTGATTTAGCAGTGGCTCTGTGCAGAAGCTTTGCGGCGGTGTGGCAAGTCGGAGGTGGTGGTGGTCTGGATGCTAGGGTGTCCTTATCAATTGGCGCCATTTGGGTTGTGTTTGGCCAGAACTATAACCCCAACATTTGGCTCGATGTGGAATTGGTTGCCCTTGTGTTGTGGGGTTGTTGGAGTAGGGCATTTTGGGCCCGCCGTGGTGAATCTTCTTGTGAAATTGTTGCTGCTGAAGCATCCAAAAAGACTGAGATTCCAGGCTTGGAGGACTCGAAGCATGAAGAAGGAATGGAAGTTATATCGTTGCCCCCACTCCACAACAATAGAAGTCCCAACCCTAGAGCTCTATTCAAGCGTGGACCTTTGTATTTGAAATTCCATAGGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.42

Weight (kDa)

8.52

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 216
AciI CCGC 3 cut(s) 113, 116, 280
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 77, 216
AgsI TTSAA 2 cut(s) 436, 457
AjnI CCWGG 2 cut(s) 70, 340
AluBI AGCT 3 cut(s) 54, 108, 428
AluI AGCT 3 cut(s) 54, 108, 428
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 2 cut(s) 193, 276
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 51, 311
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 276, 277, 443
AsuHPI GGTGA 4 cut(s) 16, 53, 92, 299
AvaII GGWCC 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 280
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 2 cut(s) 280, 430
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 63, 298
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 72, 342
BfaI CTAG 2 cut(s) 153, 423
BfoI RGCGCY 1 cut(s) 177
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 52, 114, 312
BlsI GCNGC 3 cut(s) 53, 115, 313
Bme1390I CCNGG 2 cut(s) 72, 342
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 3 cut(s) 276, 277, 443
BmiI GGNNCC 2 cut(s) 175, 278
BmrFI CCNGG 2 cut(s) 72, 342
BmsI GCATC 3 cut(s) 34, 139, 329
BpuEI CTTGAG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 216
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 2 cut(s) 72, 342
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 3 cut(s) 16, 154, 320
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 77, 216
BseMII CTCAG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 2 cut(s) 63, 298
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 121
BshFI GGCC 2 cut(s) 195, 278
BshNI GGYRCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 430
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 77, 216
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 2 cut(s) 195, 278
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 280, 430
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 3 cut(s) 113, 116, 280
BspANI GGCC 2 cut(s) 195, 278
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 175, 278
BspT107I GGYRCC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 72, 342
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 49, 280
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 3 cut(s) 16, 154, 320
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 275, 317
BstNI CCWGG 2 cut(s) 72, 342
BstSCI CCNGG 2 cut(s) 70, 340
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 63, 298
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 2 cut(s) 195, 278
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 3 cut(s) 16, 154, 320
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 49, 280
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 276, 277, 443
CviAII CATG 2 cut(s) 77, 362
DdeI CTNAG 1 cut(s) 333
DinI GGCGCC 1 cut(s) 175
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 428
Eco24I GRGCYC 2 cut(s) 280, 430
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 70, 340
EcoT38I GRGCYC 2 cut(s) 280, 430
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
FaeI CATG 2 cut(s) 80, 365
FaiI YATR 5 cut(s) 78, 204, 363, 383, 465
FaqI GGGAC 1 cut(s) 399
FatI CATG 2 cut(s) 76, 361
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 3 cut(s) 52, 114, 312
FokI GGATG 3 cut(s) 23, 161, 307
FriOI GRGCYC 2 cut(s) 280, 430
Fsp4HI GCNGC 3 cut(s) 52, 114, 312
FspBI CTAG 2 cut(s) 153, 423
GlaI GCGC 1 cut(s) 175
GluI GCNGC 3 cut(s) 52, 114, 312
GsaI CCCAGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 195, 278
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 80, 365
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 5 cut(s) 22, 64, 290, 337, 353
HphI GGTGA 4 cut(s) 16, 53, 92, 299
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 21, 131
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 317
HpyF3I CTNAG 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 80, 365
HspAI GCGC 1 cut(s) 174
KasI GGCGCC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 40, 57, 84, 131, 209, 327, 354
Lsp1109I GCAGC 2 cut(s) 63, 298
LweI GCATC 3 cut(s) 34, 139, 329
MaeI CTAG 2 cut(s) 153, 423
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 285, 377
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 280, 430
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 4 cut(s) 168, 230, 303, 458
MluNI TGGCCA 1 cut(s) 195
Mly113I GGCGCC 1 cut(s) 174
MlyI GAGTC 2 cut(s) 16, 347
MmeI TCCRAC 2 cut(s) 109, 239
MnlI CCTC 2 cut(s) 125, 343
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 72, 342
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 72, 342
MwoI GCNNNNNNNGC 2 cut(s) 275, 317
NarI GGCGCC 1 cut(s) 174
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 80, 365
NlaIV GGNNCC 2 cut(s) 175, 278
PfeI GAWTC 3 cut(s) 64, 290, 337
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 3 cut(s) 53, 115, 313
PleI GAGTC 2 cut(s) 16, 347
PluTI GGCGCC 1 cut(s) 177
PpsI GAGTC 2 cut(s) 16, 347
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 70, 340
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 2 cut(s) 70, 340
PspN4I GGNNCC 2 cut(s) 175, 278
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 276, 277, 443
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 430
SatI GCNGC 3 cut(s) 52, 114, 312
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 3 cut(s) 276, 277, 443
SchI GAGTC 2 cut(s) 16, 347
ScrFI CCNGG 2 cut(s) 72, 342
SduI GDGCHC 2 cut(s) 280, 430
SetI ASST 5 cut(s) 56, 110, 136, 430, 448
SfaNI GCATC 3 cut(s) 34, 139, 329
SfoI GGCGCC 1 cut(s) 175
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 4 cut(s) 168, 230, 303, 458
SsiI CCGC 3 cut(s) 113, 116, 280
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 2 cut(s) 153, 423
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 70, 340
TaqI TCGA 3 cut(s) 25, 222, 356
TasI AATT 4 cut(s) 168, 230, 303, 458
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 64, 290, 337
TscAI CASTG 1 cut(s) 96
TseI GCWGC 2 cut(s) 51, 311
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 1 cut(s) 458
XspI CTAG 2 cut(s) 153, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.