Rh6BG327900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000535
Physical Location & Seq
Reverse (-)
56082376 .. 56085056
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG327900.1

Sequence Viewer

Length: 729 bp
ATGATAGGGTTTCCTCGTTGGCCCTCTCGCCTTCGACAAAATTCCAAATCTATGGCTATTGCCACAAACTCCCCCTTCTTCGACGTATCATGCTTTTCTTTAGGGTGCGCTGCAGGACATTTCTCTTTGCTTTTCCTTCTCCTTGGACTTGCTGTTAGCGGTTTTGATGGAGGACTGGTTGATCCGGGATTGGCTCTTACTTTGATTCCTGATAGGTCGGGTGATGGAGGTTCTGGGGATAACGCAATTGATCCTTGGATGTGGAGGGGTTTTCTACCCTCTGGTATTCACGTCAATGGCAGCCTAACAATTTTCTTGAGCCCAGAGCATCATCGAGGGCCAATCGCGGCTGCTGCTGCTGTAGTTTATGGCGGCAATTTGGTGTTGGTGAAGGACGGTGTTCTGGCTCCGTCTGGGTGTGGTCTGTGTCGGCTTGGTCATGGTGGCTTGTTGGTGGAATTGTACCAGTGCTGTACGGCGGCGGCGCGGGACGGAGGGGGTGGTAGTGCAGGTGTCACCAACTGGGCCGCGTTAGATCGGAGCTCTAACCCTAGCTGTTGGTCTCCTGGCTTTGGGCTTGTTGGGCTCAGGTTTCTTTGGGTGTGGGCTGGCCCTATGCTTTGGGGCTGCTGGAGTAGGGTGTCTTGGGCCCTAACTACATGTTGCTTTGTTTTTTCAGATGATAGAGTTAAGGGTGAATTTTCATCCTCTTCTCCTAGTACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.37

Weight (kDa)

6.92

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 500
AccII CGCG 3 cut(s) 347, 487, 530
AciI CCGC 7 cut(s) 159, 347, 372, 479, 482, 487, 528
AclWI GGATC 2 cut(s) 176, 245
AcsI RAATTY 2 cut(s) 40, 698
AfaI GTAC 3 cut(s) 464, 475, 721
AfiI CCNNNNNNNGG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 659
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 2 cut(s) 543, 555
AluI AGCT 2 cut(s) 543, 555
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 2 cut(s) 176, 245
AoxI GGCC 5 cut(s) 20, 338, 525, 610, 648
ApaI GGGCCC 1 cut(s) 652
ApeKI GCWGC 6 cut(s) 110, 300, 350, 353, 356, 627
ApoI RAATTY 2 cut(s) 40, 698
AspLEI GCGC 2 cut(s) 110, 487
AspS9I GGNCC 6 cut(s) 21, 338, 525, 611, 648, 649
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 233, 400, 508, 707
BaeGI GKGCMC 1 cut(s) 652
BanII GRGCYC 4 cut(s) 323, 545, 588, 652
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 6 cut(s) 97, 312, 337, 340, 343, 614
BccI CCATC 2 cut(s) 161, 218
BceAI ACGGC 1 cut(s) 492
BciT130I CCWGG 1 cut(s) 567
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 552, 717
BfmI CTRYAG 2 cut(s) 111, 360
BfuAI ACCTGC 1 cut(s) 500
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 2 cut(s) 186, 567
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 6 cut(s) 21, 338, 525, 611, 648, 649
BmiI GGNNCC 2 cut(s) 408, 650
BmrFI CCNGG 2 cut(s) 186, 567
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 142, 254
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 3 cut(s) 180, 466, 527
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 142, 254
BseGI GGATG 2 cut(s) 264, 704
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 1 cut(s) 601
BseNI ACTGG 3 cut(s) 180, 466, 527
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 6 cut(s) 97, 312, 337, 340, 343, 614
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 3 cut(s) 347, 487, 530
BshFI GGCC 5 cut(s) 22, 340, 527, 612, 650
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 5 cut(s) 22, 340, 527, 612, 650
Bso31I GGTCTC 1 cut(s) 567
Bsp120I GGGCCC 1 cut(s) 648
Bsp1286I GDGCHC 4 cut(s) 323, 545, 588, 652
Bsp143I GATC 3 cut(s) 181, 250, 535
BspACI CCGC 7 cut(s) 159, 347, 372, 479, 482, 487, 528
BspANI GGCC 5 cut(s) 22, 340, 527, 612, 650
BspCNI CTCAG 1 cut(s) 600
BspFNI CGCG 3 cut(s) 347, 487, 530
BspLI GGNNCC 2 cut(s) 408, 650
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 176, 245
BspTNI GGTCTC 1 cut(s) 567
BsrI ACTGG 3 cut(s) 180, 466, 527
BssECI CCNNGG 2 cut(s) 142, 254
BssMI GATC 3 cut(s) 181, 250, 535
BssT1I CCWWGG 2 cut(s) 142, 254
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 715
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 1 cut(s) 587
BstF5I GGATG 2 cut(s) 264, 704
BstFNI CGCG 3 cut(s) 347, 487, 530
BstHHI GCGC 2 cut(s) 110, 487
BstKTI GATC 3 cut(s) 184, 253, 538
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 3 cut(s) 181, 250, 535
BstMWI GCNNNNNNNGC 3 cut(s) 353, 356, 583
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 184, 565
BstSFI CTRYAG 2 cut(s) 111, 360
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 3 cut(s) 347, 487, 530
BstV1I GCAGC 6 cut(s) 97, 312, 337, 340, 343, 614
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 5 cut(s) 22, 340, 527, 612, 650
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 264, 704
BtsIMutI CAGTG 1 cut(s) 473
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 1 cut(s) 610
CfoI GCGC 2 cut(s) 110, 487
Cfr13I GGNCC 6 cut(s) 21, 338, 525, 611, 648, 649
Csp6I GTAC 3 cut(s) 463, 474, 720
CviAII CATG 3 cut(s) 90, 440, 660
CviQI GTAC 3 cut(s) 463, 474, 720
DdeI CTNAG 1 cut(s) 587
DpnI GATC 3 cut(s) 183, 252, 537
DpnII GATC 3 cut(s) 181, 250, 535
Eam1104I CTCTTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 543
Eco130I CCWWGG 2 cut(s) 142, 254
Eco24I GRGCYC 4 cut(s) 323, 545, 588, 652
Eco31I GGTCTC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 142, 254
EcoT38I GRGCYC 4 cut(s) 323, 545, 588, 652
ErhI CCWWGG 2 cut(s) 142, 254
FaeI CATG 3 cut(s) 93, 443, 663
FaiI YATR 6 cut(s) 53, 91, 369, 441, 617, 661
FaqI GGGAC 1 cut(s) 503
FatI CATG 3 cut(s) 89, 439, 659
FauI CCCGC 1 cut(s) 480
FokI GGATG 2 cut(s) 271, 691
FriOI GRGCYC 4 cut(s) 323, 545, 588, 652
FspBI CTAG 2 cut(s) 552, 717
GlaI GCGC 2 cut(s) 109, 486
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 5 cut(s) 22, 340, 527, 612, 650
HapII CCGG 1 cut(s) 185
HhaI GCGC 2 cut(s) 110, 487
Hin1II CATG 3 cut(s) 93, 443, 663
Hin6I GCGC 2 cut(s) 108, 485
HinP1I GCGC 2 cut(s) 108, 485
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 185
HphI GGTGA 4 cut(s) 233, 400, 508, 707
Hpy188I TCNGA 2 cut(s) 540, 679
Hpy188III TCNNGA 2 cut(s) 209, 316
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 41, 85, 146, 385
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 2 cut(s) 84, 291
HpyCH4V TGCA 2 cut(s) 113, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 356, 583
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 2 cut(s) 84, 291
Hsp92II CATG 3 cut(s) 93, 443, 663
HspAI GCGC 2 cut(s) 108, 485
Kzo9I GATC 3 cut(s) 181, 250, 535
LmnI GCTCC 2 cut(s) 412, 540
Lsp1109I GCAGC 6 cut(s) 97, 312, 337, 340, 343, 614
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 552, 717
MaeII ACGT 2 cut(s) 84, 291
MaeIII GTNAC 1 cut(s) 514
MalI GATC 3 cut(s) 183, 252, 537
MboI GATC 3 cut(s) 181, 250, 535
MboII GAAGA 2 cut(s) 70, 702
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 4 cut(s) 323, 545, 588, 652
MluCI AATT 6 cut(s) 40, 246, 309, 376, 458, 698
MnlI CCTC 9 cut(s) 24, 34, 164, 221, 258, 289, 329, 488, 718
MseI TTAA 2 cut(s) 690, 727
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 186, 567
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 3 cut(s) 347, 487, 530
MwoI GCNNNNNNNGC 3 cut(s) 353, 356, 583
NciI CCSGG 1 cut(s) 186
NdeII GATC 3 cut(s) 181, 250, 535
NlaIII CATG 3 cut(s) 93, 443, 663
NlaIV GGNNCC 2 cut(s) 408, 650
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 500
PciI ACATGT 1 cut(s) 659
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 184
PscI ACATGT 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 2 cut(s) 408, 650
PspOMI GGGCCC 1 cut(s) 648
PspPI GGNCC 6 cut(s) 21, 338, 525, 611, 648, 649
PstI CTGCAG 1 cut(s) 115
RsaI GTAC 3 cut(s) 464, 475, 721
RsaNI GTAC 3 cut(s) 463, 474, 720
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 690, 727
Sau3AI GATC 3 cut(s) 181, 250, 535
Sau96I GGNCC 6 cut(s) 21, 338, 525, 611, 648, 649
ScaI AGTACT 1 cut(s) 721
ScrFI CCNGG 2 cut(s) 186, 567
SduI GDGCHC 4 cut(s) 323, 545, 588, 652
SetI ASST 8 cut(s) 87, 218, 232, 294, 514, 545, 557, 593
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 2 cut(s) 111, 360
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 6 cut(s) 40, 246, 309, 376, 458, 698
SsiI CCGC 7 cut(s) 159, 347, 372, 479, 482, 487, 528
SspMI CTAG 2 cut(s) 552, 717
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 184, 565
StyI CCWWGG 2 cut(s) 142, 254
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 2 cut(s) 87, 294
TaqI TCGA 3 cut(s) 34, 81, 334
TasI AATT 6 cut(s) 40, 246, 309, 376, 458, 698
TatI WGTACW 1 cut(s) 719
TauI GCSGC 5 cut(s) 350, 375, 482, 485, 530
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 690, 727
Tru9I TTAA 2 cut(s) 690, 727
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 6 cut(s) 110, 300, 350, 353, 356, 627
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 693
TspGWI ACGGA 2 cut(s) 399, 507
TspRI CASTG 1 cut(s) 473
XapI RAATTY 2 cut(s) 40, 698
XceI RCATGY 1 cut(s) 663
XspI CTAG 2 cut(s) 552, 717
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.