RLG00000014804

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000535
Physical Location & Seq
Forward (+)
57734123 .. 57734512
390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014804

Sequence Viewer

Length: 315 bp
ATGGCGGGCAACGATGAATCTCTGACTACGGGGGTGGGGATTTGCTTCTTCCCCTTCCCTGTGATCAACATGGCTACTGGGCAGCGAAGAATCCCGACATTGGTTGGGCTGGATGATGGCTTGGAGGTCGATTTTGCTCTTGAAATCGACAAAGATTTGGATCGAGGTTCTGGAAAAGGCGTCGGTGATCTGGTTTGTTTGGCAGTTGATGGCGACCTTGGCGACGGGGTGGTGTTGGTCGGGACCGCCTGCAATAGGAACAAATCTGGGAGCGCTTTGGTCTGGGTGATGCAGCAACGCCTTGCACAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.97

Weight (kDa)

4.28

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 246
AclWI GGATC 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 180
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 100, 255
AgsI TTSAA 1 cut(s) 143
AleI CACNNNNGTG 1 cut(s) 310
AlwI GGATC 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 82, 292
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 197, 298
AvaII GGWCC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 94, 304
BccI CCATC 2 cut(s) 110, 203
BclI TGATCA 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 2 cut(s) 83, 293
BlsI GCNGC 2 cut(s) 84, 294
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 255
Bse1I ACTGG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 100, 255
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 94, 304
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 100, 255
BsmFI GGGAC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 63, 160, 187
BspACI CCGC 2 cut(s) 5, 246
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 3 cut(s) 63, 160, 187
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 7, 250
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 66, 163, 190
BstMBI GATC 3 cut(s) 63, 160, 187
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 94, 304
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 7, 250
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 169
CviAII CATG 1 cut(s) 70
CviJI RGCY 3 cut(s) 74, 109, 120
CviKI_1 RGCY 3 cut(s) 74, 109, 120
DpnI GATC 3 cut(s) 65, 162, 189
DpnII GATC 3 cut(s) 63, 160, 187
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 73
FaiI YATR 1 cut(s) 71
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 69
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 83, 293
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 83, 293
GlaI GCGC 1 cut(s) 274
GluI GCNGC 2 cut(s) 83, 293
HaeII RGCGCY 1 cut(s) 276
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 2 cut(s) 17, 90
HphI GGTGA 2 cut(s) 197, 298
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 4 cut(s) 94, 140, 171, 241
Hpy99I CGWCG 2 cut(s) 185, 227
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 252, 292, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 160, 187
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 8 cut(s) 63, 72, 95, 156, 176, 252, 262, 268
Lsp1109I GCAGC 2 cut(s) 94, 304
LweI GCATC 1 cut(s) 279
MalI GATC 3 cut(s) 65, 162, 189
MboI GATC 3 cut(s) 63, 160, 187
MboII GAAGA 2 cut(s) 40, 99
MnlI CCTC 2 cut(s) 118, 158
MslI CAYNNNNRTG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 3 cut(s) 63, 160, 187
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 310
PfeI GAWTC 2 cut(s) 17, 90
PkrI GCNGC 2 cut(s) 84, 294
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 310
SatI GCNGC 2 cut(s) 83, 293
Sau3AI GATC 3 cut(s) 63, 160, 187
Sau96I GGNCC 1 cut(s) 243
SetI ASST 3 cut(s) 129, 169, 219
SfaNI GCATC 1 cut(s) 279
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 310
SsiI CCGC 2 cut(s) 5, 246
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 129, 147, 163
TfiI GAWTC 2 cut(s) 17, 90
TscAI CASTG 1 cut(s) 314
TseI GCWGC 2 cut(s) 82, 292
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.