RLG00000012967

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000535
Physical Location & Seq
Forward (+)
24393906 .. 24394304
399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012967

Sequence Viewer

Length: 318 bp
ATGCTCGATGTTTACGGCTTTGGTGGAGGACTATTAGATCCGGGTTTGGATCGAATTCTAGTTCCTTATGTGTTGGGTGAAGGAGGTACTGCGAATAGCAGAATCGATCCTTGGATGTGGAGAGGGTTTCTGCCTTCTGATGGTAGAGTTAGCAGTGGCGCACAAACCTGGTCGTCCAGCCCAAAATCTTGTGATGAGGACAGCAATCGACAGATGGTGAAGGATGGGGATCGGGCTCGATCTGCTCTCTTTGGCGACGCCGATGGCTGGGATAGGAATCGGCCTGATCATGATGGTCTAGCAGTGACTCTGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.39

Weight (kDa)

4.59

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 32, 57, 101, 237
AcsI RAATTY 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 140, 267
AjnI CCWGG 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AlwI GGATC 4 cut(s) 32, 57, 101, 237
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 54
AspLEI GCGC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 89, 229
BanII GRGCYC 1 cut(s) 238
BccI CCATC 5 cut(s) 134, 208, 218, 257, 287
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 42
BfaI CTAG 3 cut(s) 59, 299, 316
Bme1390I CCNGG 2 cut(s) 42, 169
BmrFI CCNGG 2 cut(s) 42, 169
BpuMI CCSGG 1 cut(s) 42
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 2 cut(s) 228, 276
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 267
Bse8I GATNNNNATC 2 cut(s) 228, 276
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 120, 229
BseJI GATNNNNATC 2 cut(s) 228, 276
BseLI CCNNNNNNNGG 2 cut(s) 140, 267
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 140, 267
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 6 cut(s) 37, 49, 106, 229, 239, 286
BspANI GGCC 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 4 cut(s) 32, 57, 101, 237
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 6 cut(s) 37, 49, 106, 229, 239, 286
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 258
BstF5I GGATG 2 cut(s) 120, 229
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 6 cut(s) 40, 52, 109, 232, 242, 289
BstMBI GATC 6 cut(s) 37, 49, 106, 229, 239, 286
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 40, 167
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 1 cut(s) 283
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 2 cut(s) 120, 229
BtsI GCAGTG 2 cut(s) 160, 309
BtsIMutI CAGTG 2 cut(s) 160, 309
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 161
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 290
CviJI RGCY 5 cut(s) 18, 180, 236, 267, 283
CviKI_1 RGCY 5 cut(s) 18, 180, 236, 267, 283
CviQI GTAC 1 cut(s) 87
DpnI GATC 6 cut(s) 39, 51, 108, 231, 241, 288
DpnII GATC 6 cut(s) 37, 49, 106, 229, 239, 286
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 69, 291
FatI CATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 286
FokI GGATG 2 cut(s) 127, 236
FriOI GRGCYC 1 cut(s) 238
FspBI CTAG 3 cut(s) 59, 299, 316
GlaI GCGC 1 cut(s) 160
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 3 cut(s) 102, 277, 307
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 89, 229
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 74, 144, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 6 cut(s) 37, 49, 106, 229, 239, 286
LpnPI CCDG 6 cut(s) 54, 154, 181, 190, 253, 297
MabI ACCWGGT 1 cut(s) 167
MaeI CTAG 3 cut(s) 59, 299, 316
MaeIII GTNAC 1 cut(s) 304
MalI GATC 6 cut(s) 39, 51, 108, 231, 241, 288
MboI GATC 6 cut(s) 37, 49, 106, 229, 239, 286
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 4 cut(s) 20, 77, 116, 190
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 42, 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 42
NdeII GATC 6 cut(s) 37, 49, 106, 229, 239, 286
NlaIII CATG 1 cut(s) 293
NmuCI GTSAC 1 cut(s) 304
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 102, 277
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
Sau3AI GATC 6 cut(s) 37, 49, 106, 229, 239, 286
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 42, 169
SduI GDGCHC 1 cut(s) 238
SetI ASST 2 cut(s) 88, 170
SexAI ACCWGGT 1 cut(s) 167
Sse9I AATT 1 cut(s) 54
SspMI CTAG 3 cut(s) 59, 299, 316
StyD4I CCNGG 2 cut(s) 40, 167
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 5 cut(s) 6, 52, 105, 208, 238
TasI AATT 1 cut(s) 54
TfiI GAWTC 2 cut(s) 102, 277
TscAI CASTG 2 cut(s) 160, 309
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspRI CASTG 2 cut(s) 160, 309
XapI RAATTY 1 cut(s) 54
XspI CTAG 3 cut(s) 59, 299, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.