Rh5CG529900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000535
Physical Location & Seq
Forward (+)
74103352 .. 74103621
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG529900.1

Sequence Viewer

Length: 270 bp
ATGGTTTTGTCACTGGACCGAGGTACTGGAAAGGGCACCGGTGACCTGGTTTGTTCGGTGGGTGATGGCAACCTTGGCAATAGGGGTAGTGTTGGTCGTGGCGGCCTGCAATGGGAACAGATCTGGGAGCGCTTTGGTCCGAGTGATACAGCGGCGCCTTGCATGGTGGTGATGGCAAACAAGGATGGTCGCGGTGGCTTCCTTATCAGTGGCCTGTGTAGTCGAATGATAGCGGCGTGGACTGGTGGCGGTGGTGGCCTGGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.06

Weight (kDa)

6.09

Isoelectric Point (pI)

21.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 35, 154
AccII CGCG 1 cut(s) 192
AciI CCGC 5 cut(s) 102, 152, 192, 233, 249
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 1 cut(s) 25
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 38
AjnI CCWGG 2 cut(s) 45, 258
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 3 cut(s) 103, 211, 256
AsiGI ACCGGT 1 cut(s) 38
AspLEI GCGC 2 cut(s) 132, 157
AspS9I GGNCC 2 cut(s) 16, 137
AsuHPI GGTGA 3 cut(s) 53, 74, 181
AvaII GGWCC 2 cut(s) 16, 137
BaeGI GKGCMC 1 cut(s) 38
BanI GGYRCC 2 cut(s) 35, 154
BccI CCATC 3 cut(s) 59, 166, 179
BciT130I CCWGG 2 cut(s) 47, 260
BfaI CTAG 1 cut(s) 268
BfoI RGCGCY 2 cut(s) 133, 158
BglII AGATCT 1 cut(s) 120
BisI GCNGC 3 cut(s) 103, 153, 234
BlsI GCNGC 3 cut(s) 104, 154, 235
Bme1390I CCNGG 2 cut(s) 47, 260
Bme18I GGWCC 2 cut(s) 16, 137
BmgT120I GGNCC 2 cut(s) 16, 137
BmiI GGNNCC 2 cut(s) 37, 156
BmrFI CCNGG 2 cut(s) 47, 260
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 19, 73
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 18, 31, 247
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 47, 260
BseDI CCNNGG 2 cut(s) 19, 73
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 116
BseNI ACTGG 3 cut(s) 18, 31, 247
BseSI GKGCMC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 105, 213, 258
BshNI GGYRCC 2 cut(s) 35, 154
BshTI ACCGGT 1 cut(s) 38
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 3 cut(s) 105, 213, 258
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 5 cut(s) 102, 152, 192, 233, 249
BspANI GGCC 3 cut(s) 105, 213, 258
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 37, 156
BspT107I GGYRCC 2 cut(s) 35, 154
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 3 cut(s) 18, 31, 247
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 19, 73
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 47, 260
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 2 cut(s) 133, 158
BstHHI GCGC 2 cut(s) 132, 157
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 75, 255
BstNI CCWGG 2 cut(s) 47, 260
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 45, 258
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 3 cut(s) 105, 213, 258
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 11, 214
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 2 cut(s) 132, 157
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 16, 137
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 1 cut(s) 24
CspAI ACCGGT 1 cut(s) 38
CviAII CATG 1 cut(s) 163
CviJI RGCY 4 cut(s) 105, 198, 213, 258
CviKI_1 RGCY 4 cut(s) 105, 198, 213, 258
CviQI GTAC 1 cut(s) 24
DinI GGCGCC 1 cut(s) 156
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 16, 137
Eco47III AGCGCT 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 45, 258
EcoT14I CCWWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 103, 153, 234
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 103, 153, 234
FspBI CTAG 1 cut(s) 268
GlaI GCGC 2 cut(s) 131, 156
GluI GCNGC 3 cut(s) 103, 153, 234
HaeII RGCGCY 2 cut(s) 133, 158
HaeIII GGCC 3 cut(s) 105, 213, 258
HapII CCGG 1 cut(s) 39
HhaI GCGC 2 cut(s) 132, 157
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 130, 155
HinP1I GCGC 2 cut(s) 130, 155
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 39
HphI GGTGA 3 cut(s) 53, 74, 181
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 109, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 255
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 130, 155
KasI GGCGCC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 12, 32, 52, 59, 109, 119, 227, 228, 245
MabI ACCWGGT 1 cut(s) 45
MaeI CTAG 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 9, 41
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 155
MnlI CCTC 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 47, 260
MvaI CCWGG 2 cut(s) 47, 260
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 75, 255
NarI GGCGCC 1 cut(s) 155
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 37, 156
NmuCI GTSAC 2 cut(s) 9, 41
PfeI GAWTC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 38
PkrI GCNGC 3 cut(s) 104, 154, 235
PluTI GGCGCC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 45, 258
PspEI GGTNACC 1 cut(s) 41
PspGI CCWGG 2 cut(s) 45, 258
PspN4I GGNNCC 2 cut(s) 37, 156
PspPI GGNCC 2 cut(s) 16, 137
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 3 cut(s) 103, 153, 234
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 16, 137
ScrFI CCNGG 2 cut(s) 47, 260
SduI GDGCHC 1 cut(s) 38
SetI ASST 3 cut(s) 25, 48, 75
SexAI ACCWGGT 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 2 cut(s) 16, 137
SmiMI CAYNNNNRTG 1 cut(s) 167
SsiI CCGC 5 cut(s) 102, 152, 192, 233, 249
SspDI GGCGCC 1 cut(s) 154
SspMI CTAG 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 45, 258
StyI CCWWGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 223
TaqII GACCGA 1 cut(s) 33
TauI GCSGC 3 cut(s) 105, 155, 236
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 2 cut(s) 18, 214
TseFI GTSAC 2 cut(s) 9, 41
Tsp45I GTSAC 2 cut(s) 9, 41
TspRI CASTG 2 cut(s) 18, 214
VpaK11BI GGWCC 2 cut(s) 16, 137
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.