RLG00000028601

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
24918853 .. 24919398
546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028601

Sequence Viewer

Length: 420 bp
ATGACTCTTGCCACAATTGACCATTCCTCCAGCGTGTCTTGTGTTGTTTTGAGGTGCGTTGCTGAATGCTATTCTTTGCTTTTCCTCCTCACTATGCTCGATGTTTGCCGCTTTGGTGGAGGACTATTAGATCTGGGTTTGGACTTGACTTTGGATCCTTATAAGTTGGGTGAAGGTGGTACTGCGAGTAGCGGAATCGATCATTGGAGTCTCTGGCGTTTTGGCCTGACTGATTTTGGAGATGAGGGTAGCAATCTGCTAATGGTGAAGGACGGTGATCGGGCTCGATCTGCTTTCGTTGGCGATGCTGGCAGCTGGGCTGGGAATCGGCTTGGTCGTGGTGGCCTAGCAGTGGCTCTGTGCCACAGCTTTGCCACAGCGAGGCAAGTTAGTGGTGGTGGTGGGGGGTGCCATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.48

Weight (kDa)

5.38

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 2 cut(s) 109, 192
AclWI GGATC 2 cut(s) 149, 162
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 2 cut(s) 352, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 2 cut(s) 315, 369
AluI AGCT 2 cut(s) 315, 369
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 149, 162
AoxI GGCC 2 cut(s) 223, 343
ApeKI GCWGC 1 cut(s) 312
AsuHPI GGTGA 3 cut(s) 182, 277, 287
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 408
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 347
BglII AGATCT 1 cut(s) 130
BisI GCNGC 2 cut(s) 109, 313
BlsI GCNGC 2 cut(s) 110, 314
BmiI GGNNCC 2 cut(s) 156, 410
BmsI GCATC 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 381
BseCI ATCGAT 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 352, 381
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 324
BseYI CCCAGC 2 cut(s) 315, 320
BshFI GGCC 2 cut(s) 225, 345
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 352, 381
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 225, 345
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 5 cut(s) 130, 154, 199, 277, 287
BspACI CCGC 2 cut(s) 109, 192
BspANI GGCC 2 cut(s) 225, 345
BspDI ATCGAT 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 156, 410
BspPI GGATC 2 cut(s) 149, 162
BspT107I GGYRCC 1 cut(s) 408
BssMI GATC 5 cut(s) 130, 154, 199, 277, 287
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 133, 157, 202, 280, 290
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 5 cut(s) 130, 154, 199, 277, 287
BstMWI GCNNNNNNNGC 2 cut(s) 290, 309
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 130, 154
BstYI RGATCY 2 cut(s) 130, 154
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 2 cut(s) 225, 345
BsuTUI ATCGAT 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 310
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 8 cut(s) 225, 284, 315, 320, 331, 345, 356, 369
CviKI_1 RGCY 8 cut(s) 225, 284, 315, 320, 331, 345, 356, 369
CviQI GTAC 1 cut(s) 180
DpnI GATC 5 cut(s) 132, 156, 201, 279, 289
DpnII GATC 5 cut(s) 130, 154, 199, 277, 287
Eco24I GRGCYC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 286
FaiI YATR 2 cut(s) 95, 162
Fnu4HI GCNGC 2 cut(s) 109, 313
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 109, 313
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 109, 313
GsaI CCCAGC 2 cut(s) 319, 324
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 2 cut(s) 225, 345
HinfI GANTC 4 cut(s) 4, 195, 208, 325
HphI GGTGA 3 cut(s) 182, 277, 287
HpyAV CCTTC 2 cut(s) 167, 262
HpyCH4III ACNGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 309
Kzo9I GATC 5 cut(s) 130, 154, 199, 277, 287
LpnPI CCDG 7 cut(s) 43, 119, 199, 239, 294, 301, 306
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 347
MalI GATC 5 cut(s) 132, 156, 201, 279, 289
MboI GATC 5 cut(s) 130, 154, 199, 277, 287
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 130, 154
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 7 cut(s) 37, 45, 95, 98, 113, 238, 375
MspA1I CMGCKG 1 cut(s) 315
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 290, 309
NdeII GATC 5 cut(s) 130, 154, 199, 277, 287
NlaIV GGNNCC 2 cut(s) 156, 410
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 195, 325
PkrI GCNGC 2 cut(s) 110, 314
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 162
PspFI CCCAGC 2 cut(s) 315, 320
PspN4I GGNNCC 2 cut(s) 156, 410
PsuI RGATCY 2 cut(s) 130, 154
PvuII CAGCTG 1 cut(s) 315
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SatI GCNGC 2 cut(s) 109, 313
Sau3AI GATC 5 cut(s) 130, 154, 199, 277, 287
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 56, 178, 317, 371
SfaNI GCATC 1 cut(s) 295
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 109, 192
SspMI CTAG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 99, 198, 286
TasI AATT 1 cut(s) 15
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 195, 325
TscAI CASTG 1 cut(s) 357
TseI GCWGC 1 cut(s) 312
TspRI CASTG 1 cut(s) 357
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.