Rw2G027510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000535
Physical Location & Seq
Reverse (-)
43194789 .. 43197564
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027510.1

Sequence Viewer

Length: 594 bp
ATGGCCGGCGACGGTGAATCTCTGACTACAGGGGTGGGGATTTTCTTCTTCCCTTTCTCTGTGATCGATATTGCTACTGGGCAGCGAAGAAATCTGACATTGATTGAGATGGATGATGGCTTCGAGGTCGGTTTTACTCTTGACATCGACGAAGACTATAGAGCTTGGGTTGCTTATGGCGTTCGTTCTCTGGTGGGATCGAGATTGGAGCGACGACCTATGGTGTTGTCAATGGTTCGGGGTATTGGAAAGGGCGCTGGTGACCTGGTTTGTTCGGCGGGTGATGGCGACCTTGGCAACAGGGGTAGTGTTGGTCGTGGCGGCCTGTATCGGGAACAGATCTGTGAGCGTTTTGATCCGGGTGATATAGCAGCGTCTTGCACGGTGGCTCTTGGTGATGATAACTTGAACAGAGATTTTGCTGTACAACAGGGATATGTTGACTATCTTGGTTTAGGAAATTGCTGGTTTTGGGGTCTGAGGACTATTGATAGTATATTAGATGACCTTGAAAGGGAGATTGATAATGGAGTGAACACTTACCAGGCAATGTGGAATGATAGCCCGTATTCTTCCTGGAGCTGCAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.65

Weight (kDa)

4.24

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 278, 321
AclWI GGATC 2 cut(s) 205, 350
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 331, 514
AgsI TTSAA 2 cut(s) 409, 512
AjnI CCWGG 3 cut(s) 264, 543, 575
AluBI AGCT 3 cut(s) 164, 582, 588
AluI AGCT 3 cut(s) 164, 582, 588
AlwI GGATC 2 cut(s) 205, 350
AlwNI CAGNNNCTG 1 cut(s) 591
AoxI GGCC 2 cut(s) 3, 322
ApeKI GCWGC 4 cut(s) 82, 371, 582, 585
AspLEI GCGC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 5 cut(s) 26, 272, 293, 374, 407
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 94, 383, 569
BccI CCATC 3 cut(s) 103, 110, 278
BciT130I CCWGG 3 cut(s) 266, 545, 577
BcnI CCSGG 1 cut(s) 360
BfmI CTRYAG 3 cut(s) 27, 157, 583
BfoI RGCGCY 1 cut(s) 258
BglII AGATCT 1 cut(s) 339
BisI GCNGC 5 cut(s) 83, 322, 372, 583, 586
BlsI GCNGC 5 cut(s) 84, 323, 373, 584, 587
Bme1390I CCNGG 4 cut(s) 266, 360, 545, 577
BmrFI CCNGG 4 cut(s) 266, 360, 545, 577
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 514
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 3 cut(s) 266, 545, 577
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 331, 514
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 94, 383, 569
BshFI GGCC 2 cut(s) 5, 324
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 2 cut(s) 6, 359
BslI CCNNNNNNNGG 2 cut(s) 331, 514
BsnI GGCC 2 cut(s) 5, 324
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 4 cut(s) 63, 197, 339, 355
BspACI CCGC 2 cut(s) 278, 321
BspANI GGCC 2 cut(s) 5, 324
BspCNI CTCAG 1 cut(s) 471
BspDI ATCGAT 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 587
BspPI GGATC 2 cut(s) 205, 350
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 63, 197, 339, 355
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 3 cut(s) 266, 545, 577
Bst4CI ACNGT 2 cut(s) 14, 385
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 479
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 66, 200, 342, 358
BstMBI GATC 4 cut(s) 63, 197, 339, 355
BstMWI GCNNNNNNNGC 2 cut(s) 170, 294
BstNI CCWGG 3 cut(s) 266, 545, 577
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 264, 358, 543, 575
BstSFI CTRYAG 3 cut(s) 27, 157, 583
BstV1I GCAGC 3 cut(s) 94, 383, 569
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 5, 324
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 591
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 363
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 425
CviJI RGCY 8 cut(s) 5, 120, 164, 324, 389, 564, 582, 588
CviKI_1 RGCY 8 cut(s) 5, 120, 164, 324, 389, 564, 582, 588
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 479
DpnI GATC 4 cut(s) 65, 199, 341, 357
DpnII GATC 4 cut(s) 63, 197, 339, 355
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 292
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 264, 543, 575
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaiI YATR 6 cut(s) 159, 177, 221, 368, 438, 497
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 5 cut(s) 83, 322, 372, 583, 586
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 5 cut(s) 83, 322, 372, 583, 586
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 83, 322, 372, 583, 586
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 2 cut(s) 5, 324
HapII CCGG 2 cut(s) 6, 359
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 257
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 6, 359
HphI GGTGA 5 cut(s) 26, 272, 293, 374, 407
Hpy166II GTNNAC 2 cut(s) 442, 535
Hpy188I TCNGA 3 cut(s) 24, 96, 480
Hpy188III TCNNGA 3 cut(s) 140, 201, 332
Hpy8I GTNNAC 2 cut(s) 442, 535
Hpy99I CGWCG 3 cut(s) 14, 152, 216
HpyCH4III ACNGT 2 cut(s) 14, 385
HpyCH4V TGCA 2 cut(s) 381, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 294
HpyF3I CTNAG 1 cut(s) 479
HspAI GCGC 1 cut(s) 255
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 63, 197, 339, 355
LmnI GCTCC 2 cut(s) 208, 579
Lsp1109I GCAGC 3 cut(s) 94, 383, 569
MabI ACCWGGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 260
MalI GATC 4 cut(s) 65, 199, 341, 357
MboI GATC 4 cut(s) 63, 197, 339, 355
MboII GAAGA 5 cut(s) 37, 40, 99, 164, 564
MflI RGATCY 1 cut(s) 339
MluCI AATT 1 cut(s) 460
MnlI CCTC 2 cut(s) 118, 474
MroNI GCCGGC 1 cut(s) 5
MspI CCGG 2 cut(s) 6, 359
MspR9I CCNGG 4 cut(s) 266, 360, 545, 577
MvaI CCWGG 3 cut(s) 266, 545, 577
MwoI GCNNNNNNNGC 2 cut(s) 170, 294
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 360
NdeII GATC 4 cut(s) 63, 197, 339, 355
NgoMIV GCCGGC 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 575
PkrI GCNGC 5 cut(s) 84, 323, 373, 584, 587
Psp6I CCWGG 3 cut(s) 264, 543, 575
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 264, 543, 575
PstI CTGCAG 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SatI GCNGC 5 cut(s) 83, 322, 372, 583, 586
Sau3AI GATC 4 cut(s) 63, 197, 339, 355
ScrFI CCNGG 4 cut(s) 266, 360, 545, 577
SetI ASST 8 cut(s) 129, 166, 220, 267, 294, 510, 584, 590
SexAI ACCWGGT 1 cut(s) 264
SfcI CTRYAG 3 cut(s) 27, 157, 583
Sse9I AATT 1 cut(s) 460
SsiI CCGC 2 cut(s) 278, 321
StyD4I CCNGG 4 cut(s) 264, 358, 543, 575
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 14, 385
TaqI TCGA 4 cut(s) 66, 123, 147, 200
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 424
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 17
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 4 cut(s) 82, 371, 582, 585
Tsp45I GTSAC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.