Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

18279555 .. 18281506

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTATTGCCACAAACTCCCGCTTCTCCAGCGTGTCATGCTTTGCTTTTGGGTGCGCTGCAGGTCTTTTCTCTTTGCTTTTCCTTCTCCTTGGACTCGCTGTTAGTGGTTTTGATGGGAGACTGTTTGATCCGGGACTGGCTCTTACTTTGATTCCTAATAGGTCGGGTGATGGAGGTTCTGGGGATAACGCAATTGATCCTTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAATGGCAGCCTAACAACCTACTTGAGCCCAGAGCATCATCAAGGGCCAGTCACGGCTGTTGCTATTGGAGTTGATGGCGGCAATCTGGTGTTGGTGAAGGACGACATTTTGACCCCGTCTGACAATAAAGGCATCAGGAAATGGCTTGATAGGAACCCAAATCCTATCCCTCTTGATTTGGAAACCCTCAATTTCATTAACTTGCAGGAGGAAGGTGAGTCCTACGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.89

Weight (kDa)

4.82

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	22, 321
AclWI	GGATC	2 cut(s)	125, 194
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	125, 194
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	59, 249
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	182, 349, 470
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	46, 261
BccI	CCATC	3 cut(s)	110, 167, 311
BceAI	ACGGC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	60, 250, 322
BlsI	GCNGC	3 cut(s)	61, 251, 323
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	286, 384
BpmI	CTGGAG	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	91, 203
Bse1I	ACTGG	2 cut(s)	144, 290
BseDI	CCNNGG	2 cut(s)	91, 203
BseNI	ACTGG	2 cut(s)	144, 290
BseXI	GCAGC	2 cut(s)	46, 261
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	130, 199
BspACI	CCGC	2 cut(s)	22, 321
BspANI	GGCC	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	125, 194
BsrI	ACTGG	2 cut(s)	144, 290
BssECI	CCNNGG	2 cut(s)	91, 203
BssMI	GATC	2 cut(s)	130, 199
BssT1I	CCWWGG	2 cut(s)	91, 203
Bst4CI	ACNGT	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	133, 202
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	130, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 39, 246
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	46, 261
BsuRI	GGCC	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	229
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	8 cut(s)	5, 143, 252, 270, 289, 299, 388, 471
CviKI_1	RGCY	8 cut(s)	5, 143, 252, 270, 289, 299, 388, 471
DpnI	GATC	2 cut(s)	132, 201
DpnII	GATC	2 cut(s)	130, 199
Eco130I	CCWWGG	2 cut(s)	91, 203
Eco24I	GRGCYC	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	91, 203
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	91, 203
FaeI	CATG	1 cut(s)	42
FaiI	YATR	1 cut(s)	40
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	3 cut(s)	60, 250, 322
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	60, 250, 322
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	60, 250, 322
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	96, 154, 461
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	3 cut(s)	182, 349, 470
Hpy188I	TCNGA	2 cut(s)	364, 476
Hpy188III	TCNNGA	2 cut(s)	379, 416
HpyAV	CCTTC	3 cut(s)	95, 334, 449
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	62, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 39, 246
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	130, 199
Lsp1109I	GCAGC	2 cut(s)	46, 261
LweI	GCATC	2 cut(s)	286, 384
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	132, 201
MboI	GATC	2 cut(s)	130, 199
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	195, 433
MlyI	GAGTC	2 cut(s)	90, 470
MnlI	CCTC	7 cut(s)	170, 201, 207, 238, 423, 440, 445
MseI	TTAA	1 cut(s)	441
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	30, 39, 246
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	130, 199
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	61, 251, 323
PleI	GAGTC	2 cut(s)	90, 469
PpsI	GAGTC	2 cut(s)	90, 469
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	60, 250, 322
Sau3AI	GATC	2 cut(s)	130, 199
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	90, 470
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	67, 167, 181, 212, 263, 460
SfaNI	GCATC	2 cut(s)	286, 384
SfcI	CTRYAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	195, 433
SsiI	CCGC	2 cut(s)	22, 321
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	91, 203
TaaI	ACNGT	1 cut(s)	126
TasI	AATT	2 cut(s)	195, 433
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	59, 249
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.