Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

18762374 .. 18762964

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTGCGTTATTCTTGGGCGCGCTGCTGAATGCTATTCTTTGTTTTTCCTCCTCCTTATGCTCGGTGTTTGCGGCTTTTATGGGGGACTATTAGATCCGGTTTTGGATCAAACTTTGGATCCTTATGTGTTGGGTGAAGGAGGTACTGCGAATAGCAGAATCGATCCTTGGAGGTGGAGAGGGTTTCTGGGCGCAAAGACTCTGATGCGTCTCGACAGATTTCGTCTGGGGCGTTTTGGCCTGGTTGGTTTTGGAGATGAGGGCAGCAATCTAGTATTGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTATTTGGTGATGCTCGCGGTTGGGGTGGGAATCAGCCTGGTCGTGGTGGTCTAGCAGTGGCTCTGTGCAGAAGCTTTGCGGCGGCATGGCAAGTCGGAGGTGGTGGTGGTCTGGACGCTAGGGTGTCCTCATCAATTGGCGCCATCTGTGCTGTGTTGGGCCAGAACTATAACCCCAACATTTGGCTCGATGTAGAGTTGGTTGTCCTTATGTTGTTGGCTGCCCTTGTGTTGCGGGGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

20.74

Weight (kDa)

7.55

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	2 cut(s)	57, 363
AciI	CCGC	5 cut(s)	108, 363, 425, 428, 580
AclWI	GGATC	5 cut(s)	125, 149, 150, 162, 194
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	389, 528
AjnI	CCWGG	2 cut(s)	276, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	5 cut(s)	125, 149, 150, 162, 194
AoxI	GGCC	2 cut(s)	274, 505
ApeKI	GCWGC	3 cut(s)	59, 300, 566
AspLEI	GCGC	4 cut(s)	57, 59, 230, 488
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	4 cut(s)	182, 328, 338, 365
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	46, 312, 553
BccI	CCATC	2 cut(s)	317, 497
BciT130I	CCWGG	2 cut(s)	278, 384
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	4 cut(s)	308, 398, 465, 589
BfoI	RGCGCY	1 cut(s)	489
BisI	GCNGC	6 cut(s)	60, 109, 301, 426, 429, 567
BlsI	GCNGC	6 cut(s)	61, 110, 302, 427, 430, 568
Bme1390I	CCNGG	2 cut(s)	278, 384
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	156, 487
BmrFI	CCNGG	2 cut(s)	278, 384
BmsI	GCATC	2 cut(s)	231, 346
BpmI	CTGGAG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 528
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	278, 384
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	389, 528
BsePI	GCGCGC	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	46, 312, 553
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	2 cut(s)	57, 363
BshFI	GGCC	2 cut(s)	276, 507
BshNI	GGYRCC	1 cut(s)	485
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	389, 528
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	276, 507
Bsp143I	GATC	5 cut(s)	130, 142, 154, 199, 328
BspACI	CCGC	5 cut(s)	108, 363, 425, 428, 580
BspANI	GGCC	2 cut(s)	276, 507
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	57, 363
BspLI	GGNNCC	2 cut(s)	156, 487
BspPI	GGATC	5 cut(s)	125, 149, 150, 162, 194
BspT107I	GGYRCC	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	203
BssHII	GCGCGC	1 cut(s)	55
BssMI	GATC	5 cut(s)	130, 142, 154, 199, 328
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	278, 384
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	57, 361
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	57, 363
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	4 cut(s)	57, 59, 230, 488
BstKTI	GATC	5 cut(s)	133, 145, 157, 202, 331
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	5 cut(s)	130, 142, 154, 199, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 341, 494
BstNI	CCWGG	2 cut(s)	278, 384
BstSCI	CCNGG	2 cut(s)	276, 382
BstUI	CGCG	2 cut(s)	57, 363
BstV1I	GCAGC	3 cut(s)	46, 312, 553
BstX2I	RGATCY	2 cut(s)	130, 154
BstYI	RGATCY	2 cut(s)	130, 154
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	276, 507
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	57, 361
CfoI	GCGC	4 cut(s)	57, 59, 230, 488
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	2 cut(s)	233, 470
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	5 cut(s)	132, 144, 156, 201, 330
DpnII	GATC	5 cut(s)	130, 142, 154, 199, 328
Eco130I	CCWWGG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	276, 382
EcoT14I	CCWWGG	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	435
FaiI	YATR	6 cut(s)	95, 117, 162, 433, 516, 557
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	431
FauI	CCCGC	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	60, 109, 301, 426, 429, 567
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	6 cut(s)	60, 109, 301, 426, 429, 567
FspBI	CTAG	4 cut(s)	308, 398, 465, 589
GlaI	GCGC	4 cut(s)	56, 58, 229, 487
GluI	GCNGC	6 cut(s)	60, 109, 301, 426, 429, 567
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	276, 507
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	2 cut(s)	233, 470
HhaI	GCGC	4 cut(s)	57, 59, 230, 488
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	4 cut(s)	55, 57, 228, 486
HinP1I	GCGC	4 cut(s)	55, 57, 228, 486
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	195, 235, 376
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	4 cut(s)	182, 328, 338, 365
Hpy188I	TCNGA	2 cut(s)	240, 443
Hpy188III	TCNNGA	2 cut(s)	248, 458
HpyAV	CCTTC	3 cut(s)	33, 167, 313
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 341, 494
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	4 cut(s)	55, 57, 228, 486
KasI	GGCGCC	1 cut(s)	485
Kzo9I	GATC	5 cut(s)	130, 142, 154, 199, 328
Lsp1109I	GCAGC	3 cut(s)	46, 312, 553
LweI	GCATC	2 cut(s)	231, 346
MaeI	CTAG	4 cut(s)	308, 398, 465, 589
MalI	GATC	5 cut(s)	132, 144, 156, 201, 330
MboI	GATC	5 cut(s)	130, 142, 154, 199, 328
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	130, 154
MluCI	AATT	2 cut(s)	15, 480
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	9 cut(s)	37, 95, 98, 170, 201, 209, 289, 437, 484
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	278, 384
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	278, 384
MvnI	CGCG	2 cut(s)	57, 363
MwoI	GCNNNNNNNGC	3 cut(s)	39, 341, 494
NarI	GGCGCC	1 cut(s)	486
NdeII	GATC	5 cut(s)	130, 142, 154, 199, 328
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	156, 487
PauI	GCGCGC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	195, 376
PflMI	CCANNNNNTGG	1 cut(s)	528
PkrI	GCNGC	6 cut(s)	61, 110, 302, 427, 430, 568
PleI	GAGTC	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	276, 382
PspGI	CCWGG	2 cut(s)	276, 382
PspN4I	GGNNCC	2 cut(s)	156, 487
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	130, 154
PteI	GCGCGC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SatI	GCNGC	6 cut(s)	60, 109, 301, 426, 429, 567
Sau3AI	GATC	5 cut(s)	130, 142, 154, 199, 328
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	278, 384
SetI	ASST	4 cut(s)	181, 212, 422, 448
SfaNI	GCATC	2 cut(s)	231, 346
SfoI	GGCGCC	1 cut(s)	487
Sse9I	AATT	2 cut(s)	15, 480
SsiI	CCGC	5 cut(s)	108, 363, 425, 428, 580
SspDI	GGCGCC	1 cut(s)	485
SspMI	CTAG	4 cut(s)	308, 398, 465, 589
StyD4I	CCNGG	2 cut(s)	276, 382
StyI	CCWWGG	1 cut(s)	203
TaqI	TCGA	4 cut(s)	198, 249, 337, 534
TasI	AATT	2 cut(s)	15, 480
TauI	GCSGC	3 cut(s)	111, 428, 431
TfiI	GAWTC	2 cut(s)	195, 376
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	3 cut(s)	59, 300, 566
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	528
XspI	CTAG	4 cut(s)	308, 398, 465, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.