Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

73661479 .. 73677715

Gene Structure 16237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG428200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTGCGTGATCTGGCTGCTGATGCTGGTATTGTGGATATGCTGGGTATTGATGATGTGGTTGATCTGGGCTTTGACCGGATCTTCTCTGGTGGAGATGTATGCTGGCGACTGTGGGAGCCAGGTATAACTAACGCCACCCTCTGGCTTACAGAGGCGAAGTTTGAAGCTTGGGTACTGGATCGGGCTTCCGCTGTTGGAGGCGGCAATCTGATGTTGGTGAACGATGGCGGTCTGGTTTCGCCTGGGAGTGATCTGTGTCGGCTTGGTAGTGGTGGCATGTTGGTGGCATTGTACCAGTGCTTTACGGCGGCGGCTCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCGGCGGTAAATCGGAGCTCTAACCCTAGCGATGATGGAGTTGAGGCGACGGTGTTTATCGCTGGTGTCTCTGGGAAGGTTATCATGGCGGCATCAATTTCTGGGTTCGAGGAGTATTGTGGGAGGCTGATGTTTGAAATGTCTCATAGATTAGAAGAAATGAATCTTGAACAGGATCAAGCCTTGTTGAAATATGAAGCCCAAAAGCTTGATCTTAAGAAAGTGCTTGACCATAGCAAGGCTCAGAAGAAAGAGCTCAAGATAGAGCTTGAGAATGATCTTCAGCAGATTGAGTTGCAACTGCAAAAAAGTGGTATCGACCATATCTTATTGTTAATCTCAGCTGGCTTAGAGACAAAGAAGGCTGATGAACTGGTGTTATGGTTGGGTGAAGAACGAAAGAAATGGGATAAAGAAAATAATATACTTCACAGGAAAGTTACCAAGTTGGAGAAACAGCTAGAGAGCTATGCTCTCTTTGGGCGCTATCTTAGAGATCCGAATTGGCATCCATTCAAAATTATCACTGATAAAGATGGAAAGACACTGGAAGTTATTGATGAAGTTGATGAAAAATTGGAGGACTTGAAGACAGAATTTGGTGATGAAGTTTTTGAAGCTGTGAAAACTGCCCTGGCTGAATTGAACGAGTATAATCCAACTGGCAGATATCCAGTACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCCCATCTACTGAACCAGATGAAACCTAATAAGCGGAGAAATGTTCGTCCAACCTCTGGTTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

387

Amino Acids

43.24

Weight (kDa)

5.14

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	265 - 376	6.9e-39	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccB7I	CCANNNNNTGG	2 cut(s)	144, 1145
AciI	CCGC	9 cut(s)	192, 204, 231, 311, 314, 359, 362, 446, 1123
AclWI	GGATC	4 cut(s)	89, 189, 540, 848
AcsI	RAATTY	2 cut(s)	953, 1048
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	177, 296, 1035
AfiI	CCNNNNNNNGG	5 cut(s)	144, 358, 595, 1145, 1149
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	8 cut(s)	167, 494, 527, 547, 874, 946, 974, 1003
AjnI	CCWGG	3 cut(s)	121, 244, 990
Alw21I	GWGCWC	2 cut(s)	377, 615
Alw26I	GTCTC	3 cut(s)	430, 504, 704
AlwI	GGATC	4 cut(s)	89, 189, 540, 848
Ama87I	CYCGRG	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	953, 1048
AspLEI	GCGC	1 cut(s)	843
AsuHPI	GGTGA	4 cut(s)	232, 340, 758, 971
AvaI	CYCGRG	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	377, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	377, 615
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	4 cut(s)	221, 386, 887, 1101
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	3 cut(s)	123, 246, 992
BciVI	GTATCC	1 cut(s)	1099
BcoDI	GTCTC	3 cut(s)	430, 504, 704
BfaI	CTAG	3 cut(s)	384, 818, 1037
BfoI	RGCGCY	1 cut(s)	844
BfrI	CTTAAG	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	1099
BisI	GCNGC	6 cut(s)	18, 205, 312, 315, 360, 447
BlsI	GCNGC	6 cut(s)	19, 206, 313, 316, 361, 448
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	3 cut(s)	123, 246, 992
BmeT110I	CYCGRG	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	123, 246, 992
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	13, 458, 874
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	953
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpuEI	CTTGAG	2 cut(s)	599, 647
BsaJI	CCNNGG	2 cut(s)	245, 990
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 358, 595, 1145, 1149
Bse1I	ACTGG	7 cut(s)	183, 298, 359, 735, 909, 1024, 1031
BseBI	CCWGG	3 cut(s)	123, 246, 992
BseDI	CCNNGG	2 cut(s)	245, 990
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	5 cut(s)	144, 358, 595, 1145, 1149
BseMII	CTCAG	2 cut(s)	614, 711
BseNI	ACTGG	7 cut(s)	183, 298, 359, 735, 909, 1024, 1031
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	377, 615
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	5 cut(s)	144, 358, 595, 1145, 1149
BsmAI	GTCTC	3 cut(s)	430, 504, 704
BsmFI	GGGAC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	377, 615
Bsp143I	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
BspACI	CCGC	9 cut(s)	192, 204, 231, 311, 314, 359, 362, 446, 1123
BspCNI	CTCAG	2 cut(s)	613, 710
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	4 cut(s)	89, 189, 540, 848
BspTI	CTTAAG	1 cut(s)	572
BsrI	ACTGG	7 cut(s)	183, 298, 359, 735, 909, 1024, 1031
BssECI	CCNNGG	2 cut(s)	245, 990
BssMI	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
Bst2UI	CCWGG	3 cut(s)	123, 246, 992
Bst4CI	ACNGT	2 cut(s)	114, 409
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	107, 703
BstDEI	CTNAG	4 cut(s)	600, 697, 706, 848
BstF5I	GGATG	1 cut(s)	865
BstH2I	RGCGCY	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	9 cut(s)	13, 67, 84, 184, 256, 535, 571, 637, 856
BstMAI	GTCTC	3 cut(s)	430, 504, 704
BstMBI	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 1076
BstNI	CCWGG	3 cut(s)	123, 246, 992
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	121, 244, 990
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	2 cut(s)	81, 853
BstYI	RGATCY	2 cut(s)	81, 853
BsuI	GTATCC	1 cut(s)	1099
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	865
BtsIMutI	CAGTG	4 cut(s)	305, 352, 882, 902
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	107, 703
CfoI	GCGC	1 cut(s)	843
Csp6I	GTAC	3 cut(s)	176, 295, 1034
CviAII	CATG	2 cut(s)	280, 442
CviQI	GTAC	3 cut(s)	176, 295, 1034
DdeI	CTNAG	4 cut(s)	600, 697, 706, 848
DpnI	GATC	9 cut(s)	12, 66, 83, 183, 255, 534, 570, 636, 855
DpnII	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
Ecl136II	GAGCTC	2 cut(s)	375, 613
Eco24I	GRGCYC	2 cut(s)	377, 615
Eco32I	GATATC	1 cut(s)	1028
Eco53kI	GAGCTC	2 cut(s)	375, 613
Eco57I	CTGAAG	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	2 cut(s)	375, 613
EcoRII	CCWGG	3 cut(s)	121, 244, 990
EcoRV	GATATC	1 cut(s)	1028
EcoT38I	GRGCYC	2 cut(s)	377, 615
FaeI	CATG	2 cut(s)	283, 445
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	2 cut(s)	279, 441
Fnu4HI	GCNGC	6 cut(s)	18, 205, 312, 315, 360, 447
FokI	GGATG	1 cut(s)	852
FriOI	GRGCYC	2 cut(s)	377, 615
Fsp4HI	GCNGC	6 cut(s)	18, 205, 312, 315, 360, 447
FspBI	CTAG	3 cut(s)	384, 818, 1037
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	6 cut(s)	18, 205, 312, 315, 360, 447
GsaI	CCCAGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	844
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	843
Hin1II	CATG	2 cut(s)	283, 445
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HindIII	AAGCTT	2 cut(s)	168, 563
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	4 cut(s)	232, 340, 758, 971
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	213, 372, 603, 858
Hpy188III	TCNNGA	3 cut(s)	320, 524, 616
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	409, 1075
HpyAV	CCTTC	3 cut(s)	427, 712, 1060
HpyCH4III	ACNGT	2 cut(s)	114, 409
HpyCH4IV	ACGT	1 cut(s)	1073
HpyCH4V	TGCA	3 cut(s)	341, 655, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 1076
HpyF3I	CTNAG	4 cut(s)	600, 697, 706, 848
HpySE526I	ACGT	1 cut(s)	1073
Hsp92II	CATG	2 cut(s)	283, 445
HspAI	GCGC	1 cut(s)	841
Kzo9I	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
LmnI	GCTCC	2 cut(s)	118, 372
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	3 cut(s)	13, 458, 874
MaeI	CTAG	3 cut(s)	384, 818, 1037
MaeII	ACGT	1 cut(s)	1073
MaeIII	GTNAC	2 cut(s)	346, 796
MalI	GATC	9 cut(s)	12, 66, 83, 183, 255, 534, 570, 636, 855
MboI	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
MboII	GAAGA	6 cut(s)	76, 524, 616, 629, 761, 958
MflI	RGATCY	2 cut(s)	81, 853
MhlI	GDGCHC	2 cut(s)	377, 615
MluCI	AATT	7 cut(s)	453, 859, 876, 932, 953, 998, 1048
MmeI	TCCRAC	5 cut(s)	178, 786, 1040, 1130, 1163
MseI	TTAA	2 cut(s)	573, 692
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	194, 701
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	3 cut(s)	123, 246, 992
MvaI	CCWGG	3 cut(s)	123, 246, 992
MwoI	GCNNNNNNNGC	2 cut(s)	23, 1076
NdeII	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
NlaIII	CATG	2 cut(s)	283, 445
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	283
PaqCI	CACCTGC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	520
PflMI	CCANNNNNTGG	2 cut(s)	144, 1145
PkrI	GCNGC	6 cut(s)	19, 206, 313, 316, 361, 448
Psp124BI	GAGCTC	2 cut(s)	377, 615
Psp6I	CCWGG	3 cut(s)	121, 244, 990
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	121, 244, 990
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	81, 853
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	177, 296, 1035
RsaNI	GTAC	3 cut(s)	176, 295, 1034
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	2 cut(s)	377, 615
SaqAI	TTAA	2 cut(s)	573, 692
SatI	GCNGC	6 cut(s)	18, 205, 312, 315, 360, 447
Sau3AI	GATC	9 cut(s)	10, 64, 81, 181, 253, 532, 568, 634, 853
ScaI	AGTACT	1 cut(s)	1035
ScrFI	CCNGG	3 cut(s)	123, 246, 992
SduI	GDGCHC	2 cut(s)	377, 615
SfaNI	GCATC	3 cut(s)	13, 458, 874
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	572, 614, 626
SmoI	CTYRAG	3 cut(s)	572, 614, 626
Sse9I	AATT	7 cut(s)	453, 859, 876, 932, 953, 998, 1048
SsiI	CCGC	9 cut(s)	192, 204, 231, 311, 314, 359, 362, 446, 1123
SspMI	CTAG	3 cut(s)	384, 818, 1037
SstI	GAGCTC	2 cut(s)	377, 615
StyD4I	CCNGG	3 cut(s)	121, 244, 990
TaaI	ACNGT	2 cut(s)	114, 409
TaiI	ACGT	1 cut(s)	1076
TaqI	TCGA	2 cut(s)	465, 675
TasI	AATT	7 cut(s)	453, 859, 876, 932, 953, 998, 1048
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	5 cut(s)	207, 314, 317, 362, 449
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	2 cut(s)	573, 692
Tru9I	TTAA	2 cut(s)	573, 692
TscAI	CASTG	4 cut(s)	305, 359, 889, 909
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	7 cut(s)	533, 567, 741, 933, 942, 978, 1124
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	305, 359, 889, 909
Van91I	CCANNNNNTGG	2 cut(s)	144, 1145
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	953, 1048
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1146
XspI	CTAG	3 cut(s)	384, 818, 1037
ZrmI	AGTACT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.