Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

2295600 .. 2296052

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCGTGTCATGCTTTGCTTTAAGGTGCGTTGCAGGTCATTTCTCTTTGGTTTTCCTTCTCCTTGGACTCGTTGTTAGTGGTTTTGATGGAGGACTTTCCTTGATTCCTGATGGGTCGGGTGATGGAGGTTATGGGGATAACGCAATTGATCCGTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAATGGCAGCCTAACAACCTGCTTGAGCCCAGAGCATCATCGAGGGCTAGTCGCGGCTGCTGCTGCTGAAGTTGATGGCGGCAATCTGGTATTGGTGAAGGACGGCGCTCGGATTCTGTTTGGGAGTGGTTTGTGCCGGCTTGGTCGTGGTAGCTTGTTGGTGGAATGGTACCAGTGCTTTGCGGCGGTGGCGCGGGACGGAGGTGGTGGTTATGCAGATGTCACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.49

Weight (kDa)

6.25

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	53, 248
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	390
AccII	CGCG	3 cut(s)	219, 275, 415
AciI	CCGC	5 cut(s)	275, 300, 404, 407, 415
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	4 cut(s)	228, 278, 281, 284
Asp718I	GGTACC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	329, 415
AsuHPI	GGTGA	3 cut(s)	161, 328, 436
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	240, 265, 268, 271
BccI	CCATC	4 cut(s)	110, 134, 146, 290
BceAI	ACGGC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	53, 248
BisI	GCNGC	7 cut(s)	229, 276, 279, 282, 285, 301, 405
BlsI	GCNGC	7 cut(s)	230, 277, 280, 283, 286, 302, 406
BmiI	GGNNCC	1 cut(s)	392
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	91, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	91, 182
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	4 cut(s)	240, 265, 268, 271
Bsh1236I	CGCG	3 cut(s)	219, 275, 415
BshNI	GGYRCC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	30, 358
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	5 cut(s)	275, 300, 404, 407, 415
BspFNI	CGCG	3 cut(s)	219, 275, 415
BspLI	GGNNCC	1 cut(s)	392
BspMI	ACCTGC	2 cut(s)	53, 248
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	91, 182
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	182
BstFNI	CGCG	3 cut(s)	219, 275, 415
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	329, 415
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 225, 281, 284, 410
BstUI	CGCG	3 cut(s)	219, 275, 415
BstV1I	GCAGC	4 cut(s)	240, 265, 268, 271
BtgI	CCRYGG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	2 cut(s)	53, 248
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	2 cut(s)	329, 415
Cfr10I	RCCGGY	1 cut(s)	357
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	7 cut(s)	5, 231, 249, 268, 278, 361, 375
CviKI_1	RGCY	7 cut(s)	5, 231, 249, 268, 278, 361, 375
CviQI	GTAC	1 cut(s)	391
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	42
FaiI	YATR	3 cut(s)	40, 162, 435
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	7 cut(s)	229, 276, 279, 282, 285, 301, 405
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	7 cut(s)	229, 276, 279, 282, 285, 301, 405
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	2 cut(s)	328, 414
GluI	GCNGC	7 cut(s)	229, 276, 279, 282, 285, 301, 405
HaeII	RGCGCY	1 cut(s)	330
HapII	CCGG	2 cut(s)	30, 358
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	329, 415
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	327, 413
HinP1I	GCGC	2 cut(s)	327, 413
HinfI	GANTC	3 cut(s)	96, 133, 334
HpaII	CCGG	2 cut(s)	30, 358
HphI	GGTGA	3 cut(s)	161, 328, 436
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	34, 95, 313
HpyCH4V	TGCA	2 cut(s)	62, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 225, 281, 284, 410
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	2 cut(s)	327, 413
KpnI	GGTACC	1 cut(s)	394
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	43, 48, 150, 195, 253, 264, 293, 371, 407
Lsp1109I	GCAGC	4 cut(s)	240, 265, 268, 271
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	7 cut(s)	113, 149, 180, 186, 217, 257, 416
MroNI	GCCGGC	1 cut(s)	357
MseI	TTAA	1 cut(s)	50
MspI	CCGG	2 cut(s)	30, 358
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	3 cut(s)	219, 275, 415
MwoI	GCNNNNNNNGC	5 cut(s)	39, 225, 281, 284, 410
NaeI	GCCGGC	1 cut(s)	359
NdeII	GATC	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	133, 334
PkrI	GCNGC	7 cut(s)	230, 277, 280, 283, 286, 302, 406
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	7 cut(s)	229, 276, 279, 282, 285, 301, 405
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	7 cut(s)	56, 67, 160, 191, 242, 377, 427
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	5 cut(s)	275, 300, 404, 407, 415
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	91
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	174
TauI	GCSGC	3 cut(s)	278, 303, 407
TfiI	GAWTC	2 cut(s)	133, 334
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	228, 278, 281, 284
Tsp45I	GTSAC	1 cut(s)	442
TspGWI	ACGGA	2 cut(s)	171, 435
TspRI	CASTG	1 cut(s)	401
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.