Rh7DG108200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000535
Physical Location & Seq
Forward (+)
9242697 .. 9276035
33339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG108200.1

Sequence Viewer

Length: 468 bp
ATGGTCATTACCCCCGATACAAGCCAAAAGAAAATCAATGTGATGTCACTGATGTGTGCATGTGAAGAACTATCTGTATCTTCCCAAGATTGGAACTTTGGAATGGCCCTCGATCTTAAGCAAAGTCGTTGTCAATATCAGGGAGACGGCCTGAATCCAAGTCGAGAGGGTGGCCAGATTCGCTGTGTGACTGGCGTGATGGTTCCCTACGAGGCTGAGATGGAGGTGACGCCACTTCTAGCACTGCCTTGCAATGTTGTTCGGGGTCAAAATCTCAATGGATCAAATTTGGAACAACTTTGGGCATTATTGCTTCTGTTTGAAATTGTCTCTGAACTGATGGCAGTACCCATGCTATGGCCTGAATCTCGACGGCTCAATTCTTGCCTGGATGATCCTATCTCTCGGTTTGGCACATCGGGTTTTATACGGAATAGGGTACTTGGGGCAATTGGAGGTGCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.07

Weight (kDa)

4.81

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 357
AclWI GGATC 2 cut(s) 289, 389
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 348, 441
AfiI CCNNNNNNNGG 2 cut(s) 90, 357
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 387
AleI CACNNNNGTG 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 2 cut(s) 138, 334
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 2 cut(s) 289, 389
AoxI GGCC 4 cut(s) 105, 148, 172, 359
ApaLI GTGCAC 1 cut(s) 459
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 463
BalI TGGCCA 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 463
BccI CCATC 3 cut(s) 193, 214, 334
BceAI ACGGC 2 cut(s) 163, 389
BciT130I CCWGG 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 138, 334
BfaI CTAG 1 cut(s) 239
BfrI CTTAAG 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 357
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 389
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 90, 357
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 463
BshFI GGCC 4 cut(s) 107, 150, 174, 361
BsiHKAI GWGCWC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 90, 357
BsmAI GTCTC 2 cut(s) 138, 334
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 4 cut(s) 107, 150, 174, 361
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 3 cut(s) 112, 281, 394
BspANI GGCC 4 cut(s) 107, 150, 174, 361
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 289, 389
BspTI CTTAAG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 196
BssMI GATC 3 cut(s) 112, 281, 394
BssNI GRCGYC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 3 cut(s) 115, 284, 397
BstMAI GTCTC 2 cut(s) 138, 334
BstMBI GATC 3 cut(s) 112, 281, 394
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 463
BsuRI GGCC 4 cut(s) 107, 150, 174, 361
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 47, 242
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 347, 440
CviAII CATG 2 cut(s) 60, 352
CviJI RGCY 7 cut(s) 24, 107, 150, 174, 215, 361, 376
CviKI_1 RGCY 7 cut(s) 24, 107, 150, 174, 215, 361, 376
CviQI GTAC 2 cut(s) 347, 440
DdeI CTNAG 1 cut(s) 216
DpnI GATC 3 cut(s) 114, 283, 396
DpnII GATC 3 cut(s) 112, 281, 394
EaeI YGGCCR 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 63, 355
FaiI YATR 5 cut(s) 61, 353, 358, 428, 466
FatI CATG 2 cut(s) 59, 351
FokI GGATG 1 cut(s) 404
FspBI CTAG 1 cut(s) 239
HaeIII GGCC 4 cut(s) 107, 150, 174, 361
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 2 cut(s) 63, 355
HinfI GANTC 3 cut(s) 154, 178, 365
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 164, 369
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 59, 252, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 2 cut(s) 63, 355
Kzo9I GATC 3 cut(s) 112, 281, 394
LpnPI CCDG 7 cut(s) 125, 164, 177, 188, 374, 375, 401
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 45, 187, 226
MalI GATC 3 cut(s) 114, 283, 396
MboI GATC 3 cut(s) 112, 281, 394
MboII GAAGA 2 cut(s) 72, 77
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 4 cut(s) 286, 324, 379, 450
MluNI TGGCCA 1 cut(s) 174
MnlI CCTC 5 cut(s) 119, 160, 205, 217, 449
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 52
Msp20I TGGCCA 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 3 cut(s) 112, 281, 394
NlaIII CATG 2 cut(s) 63, 355
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 3 cut(s) 45, 187, 226
NspI RCATGY 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 52
PfeI GAWTC 3 cut(s) 154, 178, 365
PflMI CCANNNNNTGG 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 106
RsaI GTAC 2 cut(s) 348, 441
RsaNI GTAC 2 cut(s) 347, 440
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 3 cut(s) 112, 281, 394
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 463
SetI ASST 2 cut(s) 228, 460
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 286, 324, 379, 450
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 387
TaqI TCGA 3 cut(s) 111, 163, 370
TasI AATT 4 cut(s) 286, 324, 379, 450
TfiI GAWTC 3 cut(s) 154, 178, 365
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 54, 249
TseFI GTSAC 3 cut(s) 45, 187, 226
Tsp45I GTSAC 3 cut(s) 45, 187, 226
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 2 cut(s) 54, 249
Van91I CCANNNNNTGG 1 cut(s) 357
Vha464I CTTAAG 1 cut(s) 116
VneI GTGCAC 1 cut(s) 459
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.