RLG00000024491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000535
Physical Location & Seq
Reverse (-)
36397712 .. 36398423
712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024491

Sequence Viewer

Length: 621 bp
ATGGCTCTTGCCACAATTTTTCCTTCCTCCAACGTGTCCTGCGTTGTTCTTGAGCGCGCTGCTGAATGTTATTCTTTGTTTTTCCTCCTCCTTATGCTAGGTGTTTGCGGCTTTGATGGGGGACTATTAGATCCAGTTTTAGATGGGACTTTGGATCCTTATCTGTTGGGTGAAGGAGGTACTGCGATTAGCAGAATCGATCCTTGGAGGTGGAGAGGGTTTCTGGGCGCAGAGACTCTGATGCGTCTTGACGGATTCCGTCTGGGGCGTTTTGGCCTAGTTGGTTTGGGAGATGAGGGCAGCAATCTGGTAATGGTGAAGGATGAAGCTTTGCAGCAGCGTGGCAAGTCGGAGGTGGTTGTGGTCTGGACGCTAGGGTGTCCTCATCAATTGGCGCCATTTGGGCTGTGTTGGGCCAGAACTATAACCCCAAAATTTGGTTCGATGTGGAGTTGGCTGCCCTTGTGTTGCGGGGCTGCTGGATTAGGGTATTTTGGGCCAACCGTGGTGAATCTTCTTGTGAACTTGTTGCTGCTAAAGCATCCAAAAAGACCAAAATTGCAGGATTGGAGGGCTCGGAGCATGAAGAAGGAATCACCTTCCATTCCCGCAATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.53

Weight (kDa)

8.5

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 1 cut(s) 57
AciI CCGC 3 cut(s) 108, 471, 609
AclWI GGATC 4 cut(s) 125, 149, 162, 194
AcsI RAATTY 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 33
AjuI GAANNNNNNNTTGG 4 cut(s) 187, 219, 424, 456
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 4 cut(s) 125, 149, 162, 194
AoxI GGCC 3 cut(s) 274, 414, 497
ApeKI GCWGC 7 cut(s) 59, 300, 334, 337, 457, 476, 532
ApoI RAATTY 1 cut(s) 434
AspLEI GCGC 4 cut(s) 57, 59, 230, 397
AspS9I GGNCC 2 cut(s) 414, 497
AsuHPI GGTGA 4 cut(s) 182, 328, 520, 588
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 577
BbvI GCAGC 7 cut(s) 46, 312, 346, 349, 444, 463, 519
BccI CCATC 2 cut(s) 110, 137
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 3 cut(s) 98, 278, 374
BfoI RGCGCY 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 403
BisI GCNGC 8 cut(s) 60, 109, 301, 335, 338, 458, 477, 533
BlsI GCNGC 8 cut(s) 61, 110, 302, 336, 339, 459, 478, 534
BmgT120I GGNCC 2 cut(s) 414, 497
BmiI GGNNCC 2 cut(s) 156, 396
BmsI GCATC 2 cut(s) 231, 550
BpuEI CTTGAG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 203, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 203, 504
BseGI GGATG 2 cut(s) 328, 541
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 134
BsePI GCGCGC 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 7 cut(s) 46, 312, 346, 349, 444, 463, 519
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 276, 416, 499
BshNI GGYRCC 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 198
BslFI GGGAC 2 cut(s) 135, 160
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 2 cut(s) 135, 160
BsnI GGCC 3 cut(s) 276, 416, 499
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 130, 154, 199
BspACI CCGC 3 cut(s) 108, 471, 609
BspANI GGCC 3 cut(s) 276, 416, 499
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 156, 396
BspPI GGATC 4 cut(s) 125, 149, 162, 194
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 203, 504
BssHII GCGCGC 1 cut(s) 55
BssMI GATC 3 cut(s) 130, 154, 199
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 505
BstACI GRCGYC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 328, 541
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 4 cut(s) 57, 59, 230, 397
BstKTI GATC 3 cut(s) 133, 157, 202
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 3 cut(s) 130, 154, 199
BstMWI GCNNNNNNNGC 2 cut(s) 403, 538
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 7 cut(s) 46, 312, 346, 349, 444, 463, 519
BstX2I RGATCY 2 cut(s) 130, 154
BstYI RGATCY 2 cut(s) 130, 154
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 3 cut(s) 276, 416, 499
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 328, 541
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 4 cut(s) 57, 59, 230, 397
Cfr13I GGNCC 2 cut(s) 414, 497
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 2 cut(s) 233, 379
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 583
CviQI GTAC 1 cut(s) 180
DinI GGCGCC 1 cut(s) 396
DpnI GATC 3 cut(s) 132, 156, 201
DpnII GATC 3 cut(s) 130, 154, 199
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 577
EgeI GGCGCC 1 cut(s) 396
EheI GGCGCC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 586
FaiI YATR 3 cut(s) 95, 425, 584
FaqI GGGAC 2 cut(s) 135, 160
FatI CATG 1 cut(s) 582
FauI CCCGC 2 cut(s) 464, 616
Fnu4HI GCNGC 8 cut(s) 60, 109, 301, 335, 338, 458, 477, 533
FokI GGATG 2 cut(s) 335, 528
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 8 cut(s) 60, 109, 301, 335, 338, 458, 477, 533
FspBI CTAG 3 cut(s) 98, 278, 374
GlaI GCGC 4 cut(s) 56, 58, 229, 396
GluI GCNGC 8 cut(s) 60, 109, 301, 335, 338, 458, 477, 533
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 3 cut(s) 276, 416, 499
HgaI GACGC 2 cut(s) 233, 379
HhaI GCGC 4 cut(s) 57, 59, 230, 397
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 1 cut(s) 586
Hin6I GCGC 4 cut(s) 55, 57, 228, 395
HinP1I GCGC 4 cut(s) 55, 57, 228, 395
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 5 cut(s) 195, 235, 255, 511, 593
HphI GGTGA 4 cut(s) 182, 328, 520, 588
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 3 cut(s) 240, 352, 579
Hpy188III TCNNGA 3 cut(s) 50, 248, 367
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 5 cut(s) 33, 167, 313, 583, 609
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 334, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 538
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 1 cut(s) 586
HspAI GCGC 4 cut(s) 55, 57, 228, 395
KasI GGCGCC 1 cut(s) 394
Kzo9I GATC 3 cut(s) 130, 154, 199
LmnI GCTCC 1 cut(s) 579
LpnPI CCDG 9 cut(s) 52, 147, 209, 248, 293, 352, 430, 465, 548
Lsp1109I GCAGC 7 cut(s) 46, 312, 346, 349, 444, 463, 519
LweI GCATC 2 cut(s) 231, 550
MaeI CTAG 3 cut(s) 98, 278, 374
MaeII ACGT 1 cut(s) 33
MalI GATC 3 cut(s) 132, 156, 201
MboI GATC 3 cut(s) 130, 154, 199
MboII GAAGA 2 cut(s) 506, 598
MfeI CAATTG 2 cut(s) 389, 612
MflI RGATCY 2 cut(s) 130, 154
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 5 cut(s) 15, 389, 434, 557, 612
Mly113I GGCGCC 1 cut(s) 395
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 54, 330
MseI TTAA 1 cut(s) 619
MunI CAATTG 2 cut(s) 389, 612
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 403, 538
NarI GGCGCC 1 cut(s) 395
NdeII GATC 3 cut(s) 130, 154, 199
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 2 cut(s) 156, 396
PauI GCGCGC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 4 cut(s) 195, 255, 511, 593
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 8 cut(s) 61, 110, 302, 336, 339, 459, 478, 534
PleI GAGTC 1 cut(s) 229
PluTI GGCGCC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 156, 396
PspPI GGNCC 2 cut(s) 414, 497
PsuI RGATCY 2 cut(s) 130, 154
PteI GCGCGC 1 cut(s) 55
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 619
SatI GCNGC 8 cut(s) 60, 109, 301, 335, 338, 458, 477, 533
Sau3AI GATC 3 cut(s) 130, 154, 199
Sau96I GGNCC 2 cut(s) 414, 497
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 577
SetI ASST 7 cut(s) 36, 103, 181, 212, 331, 357, 601
SfaNI GCATC 2 cut(s) 231, 550
SfoI GGCGCC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 5 cut(s) 15, 389, 434, 557, 612
SsiI CCGC 3 cut(s) 108, 471, 609
SspDI GGCGCC 1 cut(s) 394
SspMI CTAG 3 cut(s) 98, 278, 374
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 198, 443
TasI AATT 5 cut(s) 15, 389, 434, 557, 612
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 4 cut(s) 195, 255, 511, 593
Tru1I TTAA 1 cut(s) 619
Tru9I TTAA 1 cut(s) 619
TseI GCWGC 7 cut(s) 59, 300, 334, 337, 457, 476, 532
TspDTI ATGAA 2 cut(s) 339, 599
TspGWI ACGGA 2 cut(s) 248, 267
Van91I CCANNNNNTGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 434
XspI CTAG 3 cut(s) 98, 278, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.