Rh3CG157700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000535
Physical Location & Seq
Forward (+)
13242052 .. 13242420
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG157700.1

Sequence Viewer

Length: 369 bp
ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCTTGTACTGCGTTGTTCTTGGGCGCGCTGCTGAATGTTATTCTTTGTTTTTCCTCCTCCTTATACTCGGTGTTTGCGGCTTTGATGGGGGACTATCAGATCCGGTTTTAGATGGGACTTTGGATCCTTATGTGTTGGGTGAAGGAGGTACTGCGATTAGCAAAATCGATCCTTGGAGGTGGAGAGGGTTTCTGGGCGCGGAGACTCTGATGCGTCTTGACGGATTCCATCTGGAGCGTTTTGGCCTGATTGGTTTGGGAGATGAGGGCAGCAATCTGGTAATGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTCTTTGGCGATGCTGGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

4.38

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 57, 230
AciI CCGC 3 cut(s) 108, 230, 363
AclWI GGATC 4 cut(s) 125, 149, 162, 194
AfaI GTAC 2 cut(s) 38, 181
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 4 cut(s) 125, 149, 162, 194
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 59, 300
AspLEI GCGC 3 cut(s) 57, 59, 230
AsuHPI GGTGA 3 cut(s) 182, 328, 338
BamHI GGATCC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 46, 312
BccI CCATC 4 cut(s) 110, 137, 267, 317
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 3 cut(s) 60, 109, 301
BlsI GCNGC 3 cut(s) 61, 110, 302
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 231, 346
BpmI CTGGAG 2 cut(s) 13, 284
Bsa29I ATCGAT 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 327
BsePI GCGCGC 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 46, 312
Bsh1236I CGCG 2 cut(s) 57, 230
BshFI GGCC 1 cut(s) 276
BshVI ATCGAT 1 cut(s) 198
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 2 cut(s) 135, 160
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 2 cut(s) 135, 160
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 4 cut(s) 130, 154, 199, 328
BspACI CCGC 3 cut(s) 108, 230, 363
BspANI GGCC 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 2 cut(s) 57, 230
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 4 cut(s) 125, 149, 162, 194
BssECI CCNNGG 1 cut(s) 203
BssHII GCGCGC 1 cut(s) 55
BssMI GATC 4 cut(s) 130, 154, 199, 328
BssT1I CCWWGG 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 57, 361
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 57, 230
BstHHI GCGC 3 cut(s) 57, 59, 230
BstKTI GATC 4 cut(s) 133, 157, 202, 331
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 4 cut(s) 130, 154, 199, 328
BstMWI GCNNNNNNNGC 3 cut(s) 39, 341, 360
BstUI CGCG 2 cut(s) 57, 230
BstV1I GCAGC 2 cut(s) 46, 312
BstX2I RGATCY 2 cut(s) 130, 154
BstYI RGATCY 2 cut(s) 130, 154
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 57, 361
CfoI GCGC 3 cut(s) 57, 59, 230
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 37, 180
CviJI RGCY 5 cut(s) 5, 33, 111, 276, 335
CviKI_1 RGCY 5 cut(s) 5, 33, 111, 276, 335
CviQI GTAC 2 cut(s) 37, 180
DpnI GATC 4 cut(s) 132, 156, 201, 330
DpnII GATC 4 cut(s) 130, 154, 199, 328
Eco130I CCWWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 2 cut(s) 95, 162
FaqI GGGAC 2 cut(s) 135, 160
Fnu4HI GCNGC 3 cut(s) 60, 109, 301
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 60, 109, 301
GlaI GCGC 3 cut(s) 56, 58, 229
GluI GCNGC 3 cut(s) 60, 109, 301
GsuI CTGGAG 2 cut(s) 13, 284
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 233
HhaI GCGC 3 cut(s) 57, 59, 230
Hin6I GCGC 3 cut(s) 55, 57, 228
HinP1I GCGC 3 cut(s) 55, 57, 228
HinfI GANTC 2 cut(s) 235, 255
HpaII CCGG 1 cut(s) 134
HphI GGTGA 3 cut(s) 182, 328, 338
Hpy188I TCNGA 2 cut(s) 130, 240
Hpy188III TCNNGA 2 cut(s) 248, 263
HpyAV CCTTC 3 cut(s) 33, 167, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 341, 360
HspAI GCGC 3 cut(s) 55, 57, 228
Kzo9I GATC 4 cut(s) 130, 154, 199, 328
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 43, 147, 209, 248, 290, 293, 317, 345
Lsp1109I GCAGC 2 cut(s) 46, 312
LweI GCATC 2 cut(s) 231, 346
MalI GATC 4 cut(s) 132, 156, 201, 330
MboI GATC 4 cut(s) 130, 154, 199, 328
MflI RGATCY 2 cut(s) 130, 154
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 7 cut(s) 37, 95, 98, 170, 201, 209, 289
MspI CCGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 57, 230
MwoI GCNNNNNNNGC 3 cut(s) 39, 341, 360
NdeII GATC 4 cut(s) 130, 154, 199, 328
NlaIV GGNNCC 1 cut(s) 156
PauI GCGCGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 61, 110, 302
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 2 cut(s) 130, 154
PteI GCGCGC 1 cut(s) 55
RsaI GTAC 2 cut(s) 38, 181
RsaNI GTAC 2 cut(s) 37, 180
SatI GCNGC 3 cut(s) 60, 109, 301
Sau3AI GATC 4 cut(s) 130, 154, 199, 328
SchI GAGTC 1 cut(s) 229
SetI ASST 3 cut(s) 35, 181, 212
SfaNI GCATC 2 cut(s) 231, 346
Sse9I AATT 1 cut(s) 15
SsiI CCGC 3 cut(s) 108, 230, 363
StyI CCWWGG 1 cut(s) 203
TaqI TCGA 2 cut(s) 198, 337
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 255
TseI GCWGC 2 cut(s) 59, 300
TspGWI ACGGA 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.