Rh7CG110000

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000535
Physical Location & Seq
Forward (+)
8501493 .. 8505293
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG110000.1

Sequence Viewer

Length: 1038 bp
ATGAAAACCCTAGCAATCCCAGCGACGCTTCTTGCGCTAACACTAGCGCTGCCTTCTTGTGGCAGCGACGAACACAGCAGCCCCGACCGACTTCCAAACCCAGGGCATGTCTGTTCGGGTCCTTTTCTATCATTCAATCCATCCAATTGGGTACTATCTCATCTACACCTCTCAAGCTCTACCACTGATGTTCATGGCGGCGGCGTGAAGGATTCAAAGTATTGGCAATTTGATTGGCCTAATGATCATCATGGGGTTTTCTGGTGGGGTCCAGATCAAGGAGACGGCCTGAATCCAAGTCGAGAGGGTGGCCAGATTCGCTGTGTGACTGGCGTGATGATTCCCTACGAGGCTGAGATGGAGGTGACGCCACTTCTGGCACTGCCTTGCAATGTTGTTCGGCGTCAAAATCTCAATGGATCAAATTTGGAACAACTTTGGGCATTATTGCTTCTATTTGCATTTGTCTCTGAACTTATGGCAGTACCCATGCTATGGCCTGAATCTCGACGGCTCGATTCTTGCCTGGATGATCCTATCTCTGGGTTGGGCACATCGGGTTTTATACGGAATAGAGTACTTGGGGCAATTGGAGGTGCACTACAAGTGCTATGCAGCAGCGCTAGTGGGGCTGCAACTATGTTAAGGATGACGGCAGTGACCGGCGACGCTGTTAAGCTGACTATCAATGGTCGGCTTTCAAAGGCTTGGGTGCCCTTAGTAACTGGGGTGTCCAATGTTATGTCAAAATGGGCTTTTGTTTGGGCCCAGCAAATCGAAGACCTTAGCAAGCCCATTAGCAATGGCTCTTTGTTTCTTTGGCACCGGCCATTTTTCCTCGACATCTGGGACCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGCCCGCGACACCTCCGCCTTCGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCCATATCTTCAAGGCGGATCTCCCCGGATTGAAGGAGGAAGAAGTAAAGGTTGCGCTGGAGATGAATTCAGGGTTTAATGAACCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

345

Amino Acids

37.77

Weight (kDa)

5.67

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 712, 822
AccB7I CCANNNNNTGG 1 cut(s) 495
AccII CGCG 1 cut(s) 894
AciI CCGC 5 cut(s) 198, 201, 892, 903, 962
AclWI GGATC 3 cut(s) 427, 527, 972
AcoI YGGCCR 2 cut(s) 310, 827
AcsI RAATTY 2 cut(s) 424, 1012
AcyI GRCGYC 2 cut(s) 368, 403
AfaI GTAC 3 cut(s) 153, 486, 579
AfeI AGCGCT 2 cut(s) 48, 622
AfiI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 860
AgsI TTSAA 5 cut(s) 136, 216, 702, 958, 979
AjnI CCWGG 2 cut(s) 100, 525
AluBI AGCT 2 cut(s) 177, 679
AluI AGCT 2 cut(s) 177, 679
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 3 cut(s) 276, 472, 929
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 3 cut(s) 427, 527, 972
Aor51HI AGCGCT 2 cut(s) 48, 622
AoxI GGCC 6 cut(s) 236, 286, 310, 497, 765, 827
ApaI GGGCCC 1 cut(s) 769
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 6 cut(s) 49, 63, 78, 615, 618, 632
ApoI RAATTY 2 cut(s) 424, 1012
AspLEI GCGC 4 cut(s) 37, 49, 623, 1003
AspS9I GGNCC 5 cut(s) 119, 269, 765, 766, 850
AsuC2I CCSGG 2 cut(s) 941, 972
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 3 cut(s) 119, 269, 850
BaeGI GKGCMC 4 cut(s) 554, 601, 717, 769
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 2 cut(s) 712, 822
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 6 cut(s) 36, 75, 90, 619, 627, 630
BccI CCATC 2 cut(s) 148, 352
BceAI ACGGC 3 cut(s) 301, 527, 669
BciT130I CCWGG 2 cut(s) 102, 527
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 2 cut(s) 941, 972
BcoDI GTCTC 3 cut(s) 276, 472, 929
BfaI CTAG 3 cut(s) 11, 44, 624
BfoI RGCGCY 2 cut(s) 50, 624
BisI GCNGC 8 cut(s) 50, 64, 79, 199, 202, 616, 619, 633
BlsI GCNGC 8 cut(s) 51, 65, 80, 200, 203, 617, 620, 634
BmcAI AGTACT 1 cut(s) 579
Bme1390I CCNGG 4 cut(s) 102, 527, 941, 972
Bme18I GGWCC 3 cut(s) 119, 269, 850
BmgT120I GGNCC 5 cut(s) 119, 269, 765, 766, 850
BmiI GGNNCC 7 cut(s) 120, 270, 714, 767, 824, 851, 852
BmrFI CCNGG 4 cut(s) 102, 527, 941, 972
BmrI ACTGGG 1 cut(s) 735
BmsI GCATC 1 cut(s) 934
BmuI ACTGGG 1 cut(s) 735
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 1025
Bpu10I CCTNAGC 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 941, 972
BsaHI GRCGYC 2 cut(s) 368, 403
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 4 cut(s) 100, 101, 939, 970
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 860
Bse118I RCCGGY 2 cut(s) 662, 825
Bse1I ACTGG 3 cut(s) 334, 730, 932
Bse3DI GCAATG 2 cut(s) 397, 808
BseBI CCWGG 2 cut(s) 102, 527
BseDI CCNNGG 4 cut(s) 100, 101, 939, 970
BseGI GGATG 4 cut(s) 140, 535, 654, 949
BseLI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 860
BseMI GCAATG 2 cut(s) 397, 808
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 334, 730, 932
BseRI GAGGAG 2 cut(s) 868, 871
BseSI GKGCMC 4 cut(s) 554, 601, 717, 769
BseXI GCAGC 6 cut(s) 36, 75, 90, 619, 627, 630
BseYI CCCAGC 2 cut(s) 19, 768
Bsh1236I CGCG 1 cut(s) 894
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 6 cut(s) 238, 288, 312, 499, 767, 829
BshNI GGYRCC 2 cut(s) 712, 822
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 4 cut(s) 663, 826, 941, 972
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 6 cut(s) 59, 101, 278, 495, 542, 860
BsmAI GTCTC 3 cut(s) 276, 472, 929
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 6 cut(s) 238, 288, 312, 499, 767, 829
Bso31I GGTCTC 1 cut(s) 929
Bsp120I GGGCCC 1 cut(s) 765
Bsp1286I GDGCHC 4 cut(s) 554, 601, 717, 769
Bsp143I GATC 5 cut(s) 244, 274, 419, 532, 964
BspACI CCGC 5 cut(s) 198, 201, 892, 903, 962
BspANI GGCC 6 cut(s) 238, 288, 312, 499, 767, 829
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 894
BspLI GGNNCC 7 cut(s) 120, 270, 714, 767, 824, 851, 852
BspPI GGATC 3 cut(s) 427, 527, 972
BspT107I GGYRCC 2 cut(s) 712, 822
BspTNI GGTCTC 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 397, 808
BsrFI RCCGGY 2 cut(s) 662, 825
BsrI ACTGG 3 cut(s) 334, 730, 932
BssAI RCCGGY 2 cut(s) 662, 825
BssECI CCNNGG 4 cut(s) 100, 101, 939, 970
BssMI GATC 5 cut(s) 244, 274, 419, 532, 964
BssNI GRCGYC 2 cut(s) 368, 403
Bst2UI CCWGG 2 cut(s) 102, 527
BstACI GRCGYC 2 cut(s) 368, 403
BstC8I GCNNGC 2 cut(s) 791, 892
BstDEI CTNAG 3 cut(s) 354, 718, 785
BstF5I GGATG 4 cut(s) 140, 535, 654, 949
BstFNI CGCG 1 cut(s) 894
BstH2I RGCGCY 2 cut(s) 50, 624
BstHHI GCGC 4 cut(s) 37, 49, 623, 1003
BstKTI GATC 5 cut(s) 247, 277, 422, 535, 967
BstMAI GTCTC 3 cut(s) 276, 472, 929
BstMBI GATC 5 cut(s) 244, 274, 419, 532, 964
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 20, 34, 318, 629
BstNI CCWGG 2 cut(s) 102, 527
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 100, 525, 939, 970
BstSLI GKGCMC 4 cut(s) 554, 601, 717, 769
BstUI CGCG 1 cut(s) 894
BstV1I GCAGC 6 cut(s) 36, 75, 90, 619, 627, 630
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 1 cut(s) 964
BsuRI GGCC 6 cut(s) 238, 288, 312, 499, 767, 829
BtsCI GGATG 4 cut(s) 140, 535, 654, 949
BtsI GCAGTG 3 cut(s) 380, 663, 885
BtsIMutI CAGTG 4 cut(s) 183, 380, 663, 885
Cac8I GCNNGC 2 cut(s) 791, 892
CfoI GCGC 4 cut(s) 37, 49, 623, 1003
Cfr10I RCCGGY 2 cut(s) 662, 825
Cfr13I GGNCC 5 cut(s) 119, 269, 765, 766, 850
CseI GACGC 4 cut(s) 34, 376, 392, 677
Csp6I GTAC 3 cut(s) 152, 485, 578
CviAII CATG 4 cut(s) 107, 194, 251, 490
CviQI GTAC 3 cut(s) 152, 485, 578
DdeI CTNAG 3 cut(s) 354, 718, 785
DpnI GATC 5 cut(s) 246, 276, 421, 534, 966
DpnII GATC 5 cut(s) 244, 274, 419, 532, 964
EaeI YGGCCR 2 cut(s) 310, 827
EciI GGCGGA 2 cut(s) 892, 977
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 3 cut(s) 119, 269, 850
Eco47III AGCGCT 2 cut(s) 48, 622
EcoO109I RGGNCCY 2 cut(s) 119, 850
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 2 cut(s) 100, 525
EcoT38I GRGCYC 1 cut(s) 769
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 4 cut(s) 110, 197, 254, 493
FaqI GGGAC 1 cut(s) 863
FatI CATG 4 cut(s) 106, 193, 250, 489
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 8 cut(s) 50, 64, 79, 199, 202, 616, 619, 633
FokI GGATG 4 cut(s) 127, 542, 661, 956
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 8 cut(s) 50, 64, 79, 199, 202, 616, 619, 633
FspBI CTAG 3 cut(s) 11, 44, 624
GlaI GCGC 4 cut(s) 36, 48, 622, 1002
GluI GCNGC 8 cut(s) 50, 64, 79, 199, 202, 616, 619, 633
GsaI CCCAGC 2 cut(s) 23, 772
GsuI CTGGAG 1 cut(s) 1025
HaeII RGCGCY 2 cut(s) 50, 624
HaeIII GGCC 6 cut(s) 238, 288, 312, 499, 767, 829
HapII CCGG 4 cut(s) 663, 826, 941, 972
HgaI GACGC 4 cut(s) 34, 376, 392, 677
HhaI GCGC 4 cut(s) 37, 49, 623, 1003
Hin1I GRCGYC 2 cut(s) 368, 403
Hin1II CATG 4 cut(s) 110, 197, 254, 493
Hin6I GCGC 4 cut(s) 35, 47, 621, 1001
HinP1I GCGC 4 cut(s) 35, 47, 621, 1001
HinfI GANTC 7 cut(s) 212, 292, 316, 340, 503, 518, 921
HpaII CCGG 4 cut(s) 663, 826, 941, 972
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 3 cut(s) 272, 302, 507
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 4 cut(s) 28, 71, 513, 671
HpyAV CCTTC 6 cut(s) 63, 202, 865, 916, 925, 973
HpyCH4V TGCA 5 cut(s) 390, 461, 599, 615, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 34, 318, 629
HpyF3I CTNAG 3 cut(s) 354, 718, 785
Hsp92I GRCGYC 2 cut(s) 368, 403
Hsp92II CATG 4 cut(s) 110, 197, 254, 493
HspAI GCGC 4 cut(s) 35, 47, 621, 1001
KflI GGGWCCC 1 cut(s) 850
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 5 cut(s) 244, 274, 419, 532, 964
Lsp1109I GCAGC 6 cut(s) 36, 75, 90, 619, 627, 630
LweI GCATC 1 cut(s) 934
MaeI CTAG 3 cut(s) 11, 44, 624
MaeIII GTNAC 4 cut(s) 325, 364, 658, 721
MalI GATC 5 cut(s) 246, 276, 421, 534, 966
MboI GATC 5 cut(s) 244, 274, 419, 532, 964
MboII GAAGA 3 cut(s) 791, 946, 998
MfeI CAATTG 2 cut(s) 145, 588
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 4 cut(s) 554, 601, 717, 769
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 5 cut(s) 145, 227, 424, 588, 1012
MluNI TGGCCA 1 cut(s) 312
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 3 cut(s) 644, 675, 1023
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 4 cut(s) 663, 826, 941, 972
MspR9I CCNGG 4 cut(s) 102, 527, 941, 972
MunI CAATTG 2 cut(s) 145, 588
MvaI CCWGG 2 cut(s) 102, 527
MvnI CGCG 1 cut(s) 894
MwoI GCNNNNNNNGC 4 cut(s) 20, 34, 318, 629
NciI CCSGG 2 cut(s) 941, 972
NdeII GATC 5 cut(s) 244, 274, 419, 532, 964
NlaIII CATG 4 cut(s) 110, 197, 254, 493
NlaIV GGNNCC 7 cut(s) 120, 270, 714, 767, 824, 851, 852
NmuCI GTSAC 3 cut(s) 325, 364, 658
NspI RCATGY 1 cut(s) 110
PasI CCCWGGG 1 cut(s) 101
PfeI GAWTC 7 cut(s) 212, 292, 316, 340, 503, 518, 921
PflMI CCANNNNNTGG 1 cut(s) 495
PkrI GCNGC 8 cut(s) 51, 65, 80, 200, 203, 617, 620, 634
PpuMI RGGWCCY 2 cut(s) 119, 850
Psp5II RGGWCCY 2 cut(s) 119, 850
Psp6I CCWGG 2 cut(s) 100, 525
PspFI CCCAGC 2 cut(s) 19, 768
PspGI CCWGG 2 cut(s) 100, 525
PspN4I GGNNCC 7 cut(s) 120, 270, 714, 767, 824, 851, 852
PspOMI GGGCCC 1 cut(s) 765
PspPI GGNCC 5 cut(s) 119, 269, 765, 766, 850
PspPPI RGGWCCY 2 cut(s) 119, 850
PsuI RGATCY 1 cut(s) 964
RsaI GTAC 3 cut(s) 153, 486, 579
RsaNI GTAC 3 cut(s) 152, 485, 578
SaqAI TTAA 3 cut(s) 644, 675, 1023
SatI GCNGC 8 cut(s) 50, 64, 79, 199, 202, 616, 619, 633
Sau3AI GATC 5 cut(s) 244, 274, 419, 532, 964
Sau96I GGNCC 5 cut(s) 119, 269, 765, 766, 850
ScaI AGTACT 1 cut(s) 579
ScrFI CCNGG 4 cut(s) 102, 527, 941, 972
SduI GDGCHC 4 cut(s) 554, 601, 717, 769
SetI ASST 8 cut(s) 171, 179, 366, 598, 681, 786, 902, 999
SfaNI GCATC 1 cut(s) 934
SinI GGWCC 3 cut(s) 119, 269, 850
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 5 cut(s) 145, 227, 424, 588, 1012
SsiI CCGC 5 cut(s) 198, 201, 892, 903, 962
SspMI CTAG 3 cut(s) 11, 44, 624
StyD4I CCNGG 4 cut(s) 100, 525, 939, 970
TaqI TCGA 6 cut(s) 301, 508, 516, 777, 840, 924
TaqII GACCGA 1 cut(s) 102
TasI AATT 5 cut(s) 145, 227, 424, 588, 1012
TatI WGTACW 1 cut(s) 577
TauI GCSGC 2 cut(s) 201, 204
TfiI GAWTC 7 cut(s) 212, 292, 316, 340, 503, 518, 921
Tru1I TTAA 3 cut(s) 644, 675, 1023
Tru9I TTAA 3 cut(s) 644, 675, 1023
TscAI CASTG 4 cut(s) 190, 387, 663, 892
TseFI GTSAC 3 cut(s) 325, 364, 658
TseI GCWGC 6 cut(s) 49, 63, 78, 615, 618, 632
Tsp45I GTSAC 3 cut(s) 325, 364, 658
TspDTI ATGAA 4 cut(s) 17, 182, 847, 1025
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 4 cut(s) 190, 387, 663, 892
Van91I CCANNNNNTGG 1 cut(s) 495
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 3 cut(s) 119, 269, 850
XapI RAATTY 2 cut(s) 424, 1012
XceI RCATGY 1 cut(s) 110
XspI CTAG 3 cut(s) 11, 44, 624
ZrmI AGTACT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.