Rh1CG331900

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018043
Physical Location & Seq
Reverse (-)
60612824 .. 60614271
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG331900.1

Sequence Viewer

Length: 1107 bp
ATGGATCCATCGAGCAAGGAGAAGTATCGTCCCAATTTGGACACAGTTCTAGAGGTCCCTCACAAGATCACAGTTCTAAAGGTCCCTCGCAAGAACACAACAAAGTTATGGAACAGAATGAAATCATTGATGAACCCGAGGGCACTGTCTCCCGATGTCATTGATGAACCCGATGGCAGGGCACTAGCTAGCTTACTTAGAGTTATTGGAGCTCCACTCGACCGCAACCTCATCCTAGGGCAATGGGATGCCGGGGCTGAAATTTCAGCGGCTGAATACATTGTGAAGCAATACGTGGCGGCATTGGGCGGGGAGAAGGCTTTGTCATCAATGGACAGCTTGTGTGCGACGGGCAAGGTGCAGATCACAGTGTCAAATGGGACGAAAGGAAGCTTGAAATCCATTGGCGGTGGGGGAGGAGTCGGAGGACATGGAATGCCAGGGTTTGTGCTCTGGCAAAAGAGGGAGCTATGGTGCTTGGAAGTGATGTTGTCTACTGGTTACAAAGTTAGCACGGGGAGTGATGGCAAGGCACCTTTTCCTTGGCATCACTCGTACGCTTATCGAGTCCCACCTCTTCCCCTCGGACATCTCCTTCAGGATCTTAATCCAAGGTCAACAGCAAATTTATTCAGAAACTCCGTTTGTGTTGCGGACAAACCAATAAACAAAGAGGACTGCTTCATACTAAAACTGACGGTTAAGCCTTCAACACTAAGCAGCAGCAACGTAGAGATAGTTCGACAAACCGTTTTGGGCTACTTCAGCCACAAAACAGGCCTTTTGGTAAAGCTAGAAGACTCTCGCCAACTAAGGACGACAGCTTTCGGAAAGCACAGTTATTGGGAATCGACAATGGAGTCAGACTTCCAAGACTACAGAACCATCGACGGCCTCAACATCGCACACGGGGGTAGGACTTGTGTGTCTTTGTGTGGTGAGAGCTCGGAAGGCCATCCCCGGAGAAGAATAGTGAAATTGGTTTGGGCACTTGAAGAAGTAGGTTTTGACATTAAGGGGTTGTCCGTGGAGTGCTTCTTGCCTCCTGGTGACTTAAAGAAAGAGGAAGAAAGCTGCGGGATGGTGAAATCTAAATCACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

368

Amino Acids

40.43

Weight (kDa)

8.97

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 115 - 349 1.7e-68 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14750
rosa_chinensis RchiOBHm_Chr1g0369021
rosa_laevigata RLG00000027164
rosa_multiflora Rmu_sc0004250.1_g000030
rosa_roxburghii Rroxscaffold_4G00288080
rosa_rugosa Rorug01G0347000
rosa_samantha Rh1AG353900 Rh1BG317400 Rh1CG331900 Rh1DG348300
rosa_wichuraiana Rw1G031270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 859, 925
AccB1I GGYRCC 1 cut(s) 532
AccI GTMKAC 1 cut(s) 494
AciI CCGC 7 cut(s) 223, 269, 299, 309, 408, 653, 1077
AclWI GGATC 2 cut(s) 12, 609
AcsI RAATTY 2 cut(s) 261, 625
AcuI CTGAAG 2 cut(s) 581, 748
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 3 cut(s) 397, 711, 995
AjnI CCWGG 2 cut(s) 439, 1045
Alw21I GWGCWC 3 cut(s) 214, 453, 947
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 2 cut(s) 12, 609
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 778, 892, 952
ApeKI GCWGC 3 cut(s) 720, 723, 1074
ApoI RAATTY 2 cut(s) 261, 625
AspA2I CCTAGG 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 55, 82
AsuC2I CCSGG 2 cut(s) 253, 961
AsuHPI GGTGA 3 cut(s) 950, 1061, 1096
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 2 cut(s) 55, 82
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 3 cut(s) 145, 184, 991
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 532
BanII GRGCYC 2 cut(s) 214, 947
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 214, 453, 947
BbvI GCAGC 3 cut(s) 732, 735, 1061
BccI CCATC 6 cut(s) 16, 167, 518, 893, 963, 1075
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 2 cut(s) 441, 1047
BcnI CCSGG 2 cut(s) 253, 961
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 5 cut(s) 50, 185, 189, 236, 794
BfmI CTRYAG 1 cut(s) 877
BisI GCNGC 5 cut(s) 270, 300, 721, 724, 1075
BlnI CCTAGG 1 cut(s) 235
BlsI GCNGC 5 cut(s) 271, 301, 722, 725, 1076
Bme1390I CCNGG 4 cut(s) 253, 441, 961, 1047
Bme18I GGWCC 2 cut(s) 55, 82
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 55, 82
BmiI GGNNCC 4 cut(s) 6, 57, 84, 534
BmrFI CCNGG 4 cut(s) 253, 441, 961, 1047
BmsI GCATC 2 cut(s) 238, 556
BmtI GCTAGC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpuMI CCSGG 2 cut(s) 253, 961
BsaAI YACGTR 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 9 cut(s) 137, 235, 252, 440, 542, 583, 611, 959, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 2 cut(s) 441, 1047
BseDI CCNNGG 9 cut(s) 137, 235, 252, 440, 542, 583, 611, 959, 1026
BseGI GGATG 4 cut(s) 231, 253, 955, 1086
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 3 cut(s) 145, 184, 991
BseXI GCAGC 3 cut(s) 732, 735, 1061
BsgI GTGCAG 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 780, 894, 954
BshNI GGYRCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 3 cut(s) 214, 453, 947
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 252, 961
BsiWI CGTACG 1 cut(s) 555
BslFI GGGAC 5 cut(s) 15, 41, 68, 394, 554
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 5 cut(s) 15, 41, 68, 394, 554
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 3 cut(s) 780, 894, 954
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 6 cut(s) 145, 184, 214, 453, 947, 991
Bsp143I GATC 4 cut(s) 4, 66, 363, 601
BspACI CCGC 7 cut(s) 223, 269, 299, 309, 408, 653, 1077
BspANI GGCC 3 cut(s) 780, 894, 954
BspLI GGNNCC 4 cut(s) 6, 57, 84, 534
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 12, 609
BspT107I GGYRCC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 9 cut(s) 137, 235, 252, 440, 542, 583, 611, 959, 1026
BssMI GATC 4 cut(s) 4, 66, 363, 601
BssT1I CCWWGG 3 cut(s) 235, 542, 611
Bst2UI CCWGG 2 cut(s) 441, 1047
Bst4CI ACNGT 7 cut(s) 46, 73, 147, 370, 700, 751, 839
Bst6I CTCTTC 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 197, 716, 812
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 4 cut(s) 231, 253, 955, 1086
BstKTI GATC 4 cut(s) 7, 69, 366, 604
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 4 cut(s) 4, 66, 363, 601
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 765, 951
BstNI CCWGG 2 cut(s) 441, 1047
BstSCI CCNGG 4 cut(s) 251, 439, 959, 1045
BstSFI CTRYAG 1 cut(s) 877
BstSLI GKGCMC 3 cut(s) 145, 184, 991
BstV1I GCAGC 3 cut(s) 732, 735, 1061
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 4, 601
BstYI RGATCY 2 cut(s) 4, 601
BsuRI GGCC 3 cut(s) 780, 894, 954
BtgI CCRYGG 1 cut(s) 1026
BtgZI GCGATG 1 cut(s) 886
BtsCI GGATG 4 cut(s) 231, 253, 955, 1086
BtsIMutI CAGTG 2 cut(s) 143, 375
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 55, 82
Csp6I GTAC 1 cut(s) 556
CviAII CATG 1 cut(s) 431
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 197, 716, 812
DpnI GATC 4 cut(s) 6, 68, 365, 603
DpnII GATC 4 cut(s) 4, 66, 363, 601
DrdI GACNNNNNNGTC 2 cut(s) 859, 925
DseDI GACNNNNNNGTC 2 cut(s) 859, 925
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 2 cut(s) 212, 945
Eco130I CCWWGG 3 cut(s) 235, 542, 611
Eco147I AGGCCT 1 cut(s) 780
Eco24I GRGCYC 2 cut(s) 214, 947
Eco47I GGWCC 2 cut(s) 55, 82
Eco53kI GAGCTC 2 cut(s) 212, 945
Eco57I CTGAAG 2 cut(s) 581, 748
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 2 cut(s) 212, 945
EcoO109I RGGNCCY 2 cut(s) 55, 82
EcoRII CCWGG 2 cut(s) 439, 1045
EcoT14I CCWWGG 3 cut(s) 235, 542, 611
EcoT38I GRGCYC 2 cut(s) 214, 947
ErhI CCWWGG 3 cut(s) 235, 542, 611
FaeI CATG 1 cut(s) 434
FaiI YATR 4 cut(s) 109, 432, 472, 686
FaqI GGGAC 5 cut(s) 15, 41, 68, 394, 554
FatI CATG 1 cut(s) 430
FauI CCCGC 2 cut(s) 302, 1070
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 5 cut(s) 270, 300, 721, 724, 1075
FokI GGATG 4 cut(s) 218, 260, 942, 1093
FriOI GRGCYC 2 cut(s) 214, 947
Fsp4HI GCNGC 5 cut(s) 270, 300, 721, 724, 1075
FspBI CTAG 5 cut(s) 50, 185, 189, 236, 794
GluI GCNGC 5 cut(s) 270, 300, 721, 724, 1075
HaeIII GGCC 3 cut(s) 780, 894, 954
HapII CCGG 2 cut(s) 252, 961
Hin1II CATG 1 cut(s) 434
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 5 cut(s) 420, 567, 800, 848, 860
HpaII CCGG 2 cut(s) 252, 961
HphI GGTGA 3 cut(s) 950, 1061, 1096
Hpy166II GTNNAC 2 cut(s) 495, 618
Hpy188I TCNGA 6 cut(s) 425, 587, 635, 830, 865, 949
Hpy188III TCNNGA 3 cut(s) 50, 152, 599
Hpy8I GTNNAC 2 cut(s) 495, 618
Hpy99I CGWCG 2 cut(s) 352, 893
HpyAV CCTTC 4 cut(s) 310, 605, 717, 944
HpyCH4III ACNGT 7 cut(s) 46, 73, 147, 370, 700, 751, 839
HpyCH4IV ACGT 2 cut(s) 294, 729
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 765, 951
HpyF3I CTNAG 3 cut(s) 197, 716, 812
HpySE526I ACGT 2 cut(s) 294, 729
Hsp92II CATG 1 cut(s) 434
Kzo9I GATC 4 cut(s) 4, 66, 363, 601
LmnI GCTCC 3 cut(s) 209, 217, 466
Lsp1109I GCAGC 3 cut(s) 732, 735, 1061
LweI GCATC 2 cut(s) 238, 556
MaeI CTAG 5 cut(s) 50, 185, 189, 236, 794
MaeII ACGT 2 cut(s) 294, 729
MaeIII GTNAC 2 cut(s) 500, 1049
MalI GATC 4 cut(s) 6, 68, 365, 603
MboI GATC 4 cut(s) 4, 66, 363, 601
MboII GAAGA 5 cut(s) 569, 809, 978, 1007, 1079
MflI RGATCY 2 cut(s) 4, 601
MhlI GDGCHC 6 cut(s) 145, 184, 214, 453, 947, 991
MluCI AATT 5 cut(s) 34, 261, 625, 977, 1102
MlyI GAGTC 4 cut(s) 429, 576, 794, 869
MmeI TCCRAC 1 cut(s) 403
MseI TTAA 5 cut(s) 606, 702, 1014, 1055, 1105
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 252, 961
MspR9I CCNGG 4 cut(s) 253, 441, 961, 1047
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 2 cut(s) 441, 1047
MwoI GCNNNNNNNGC 2 cut(s) 765, 951
NciI CCSGG 2 cut(s) 253, 961
NdeII GATC 4 cut(s) 4, 66, 363, 601
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 4 cut(s) 6, 57, 84, 534
NmuCI GTSAC 1 cut(s) 1049
PceI AGGCCT 1 cut(s) 780
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 848
Pfl23II CGTACG 1 cut(s) 555
PkrI GCNGC 5 cut(s) 271, 301, 722, 725, 1076
PleI GAGTC 4 cut(s) 428, 575, 794, 868
PpsI GAGTC 4 cut(s) 428, 575, 794, 868
Ppu21I YACGTR 1 cut(s) 295
PpuMI RGGWCCY 2 cut(s) 55, 82
Psp124BI GAGCTC 2 cut(s) 214, 947
Psp5II RGGWCCY 2 cut(s) 55, 82
Psp6I CCWGG 2 cut(s) 439, 1045
PspGI CCWGG 2 cut(s) 439, 1045
PspLI CGTACG 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 6, 57, 84, 534
PspPI GGNCC 2 cut(s) 55, 82
PspPPI RGGWCCY 2 cut(s) 55, 82
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 4, 601
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SacI GAGCTC 2 cut(s) 214, 947
SaqAI TTAA 5 cut(s) 606, 702, 1014, 1055, 1105
SatI GCNGC 5 cut(s) 270, 300, 721, 724, 1075
Sau3AI GATC 4 cut(s) 4, 66, 363, 601
Sau96I GGNCC 2 cut(s) 55, 82
SchI GAGTC 4 cut(s) 429, 576, 794, 869
ScrFI CCNGG 4 cut(s) 253, 441, 961, 1047
SduI GDGCHC 6 cut(s) 145, 184, 214, 453, 947, 991
SfaNI GCATC 2 cut(s) 238, 556
SfcI CTRYAG 1 cut(s) 877
SinI GGWCC 2 cut(s) 55, 82
Sse9I AATT 5 cut(s) 34, 261, 625, 977, 1102
SseBI AGGCCT 1 cut(s) 780
SsiI CCGC 7 cut(s) 223, 269, 299, 309, 408, 653, 1077
SspMI CTAG 5 cut(s) 50, 185, 189, 236, 794
SstI GAGCTC 2 cut(s) 214, 947
StuI AGGCCT 1 cut(s) 780
StyD4I CCNGG 4 cut(s) 251, 439, 959, 1045
StyI CCWWGG 3 cut(s) 235, 542, 611
TaaI ACNGT 7 cut(s) 46, 73, 147, 370, 700, 751, 839
TaiI ACGT 2 cut(s) 297, 732
TaqI TCGA 6 cut(s) 11, 219, 565, 742, 851, 888
TasI AATT 5 cut(s) 34, 261, 625, 977, 1102
TauI GCSGC 2 cut(s) 272, 302
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 5 cut(s) 606, 702, 1014, 1055, 1105
Tru9I TTAA 5 cut(s) 606, 702, 1014, 1055, 1105
TscAI CASTG 2 cut(s) 150, 375
TseFI GTSAC 1 cut(s) 1049
TseI GCWGC 3 cut(s) 720, 723, 1074
Tsp45I GTSAC 1 cut(s) 1049
TspDTI ATGAA 4 cut(s) 134, 146, 180, 673
TspGWI ACGGA 2 cut(s) 631, 1015
TspRI CASTG 2 cut(s) 150, 375
VpaK11BI GGWCC 2 cut(s) 55, 82
XapI RAATTY 2 cut(s) 261, 625
XbaI TCTAGA 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 494
XspI CTAG 5 cut(s) 50, 185, 189, 236, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.