Rw1G031270

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0018043
Physical Location & Seq
Reverse (-)
59391930 .. 59396343
4414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031270.1

Sequence Viewer

Length: 1251 bp
ATGAACCCATCGAGCAAGGAGAAGTATCGTCCCAATTTGGACACAGTTCTAGAGGTCCCTCACAAGATCACAGTTCTAAAGGTCCCTCGCAAGAACACAACAAAGTTATGGAACAGAATGAAATCATTGATGAACCCGAGGGCACTGTCTCCCAATGTCATTGATGAACCCGATGGCAGGGCACTAGCTAGCTTACTTAGAGTTATTGGAGCTCCACTCGACCTCAACCTCATCCTAGGGCAATGGGATCATTGGGATGCCGGGGCTGAATACATTGTGAAGCAATACGTGGCGGCGTTGGGCGGGGAGAAGGCTTTGCCATCAATGGACAGCTTGTGTGCGACGGGCAAGGTGCAGATCACAGTGTCAAATGGGACGAAAGGAAGCTTGAAATCCATTGGCGGTGGGGGAGGAGTCGGAGGACATGGAATGCCAGGGTTTGTGCTCTGGCAAAAGAGGGAGGTATGGTGCTTGGAAGTGATGTTGTCTATCACGGGGAGTGATGGCAAGGCGCCTTTGCCTTGGCATCACTCGTACGCTTATCGAGTCCCACCTCTTCCCCTCGGACATCTCCTTCAGGGTCTTAATCCAAGGTCAACAGCAAATTTATTCAGAAACTCCTTTTGTTCTGCGGACAAACCAATAAACAAAGAGGACTGCTTCATACTAAAACTGAAGGTTAAACCTTCAACACTAAGCCGCAGCAACGTAGAGATAGTTCGACAAACCGTTTTGGGCTACTTCAGCCACAAAACAGGCCTTTTGGTGAAGCTAGAAGACTCTCGCCAACTAAGGACGACAGCTTTCGGAAAGCACAGTTATTGGGAATCGACAATGGAGTCAGACTTCCAAGACTACAGAACCATCGACGGCCTCAACATCGCACACGGGGGTAGGACTTGTGTGTCTTTGTGTGGTGAGAGCTCGGAAGGCCATCCCCGGAGAAGAATAGTGAAATTGGTTTGGGCACTCGAAGAAGTAGGTTTTGACATTAAGGGGTTGTCCGTGGAGTGCTTCTTGCCTCCTGGTGACTTAAAGAAAGAGGAAGAAAGCTGCGGCATGGTGAAATCTAAATCTTGTGCAAAATTAACATCCAGAATTCCATCTCCTTTGAGATTTCAAGCTACCAAAGTAGTTCCCAGTGATGATTCTAATCATGATCTAGAAGGTAGCGACATTAGTGACCAGGAGGATCTTCAAGATTTCGAGAGCTGCAACAGTAGTGACCTTGATGATTCTGATCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

416

Amino Acids

45.86

Weight (kDa)

7.58

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 113 - 342 6.1e-64 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14750
rosa_chinensis RchiOBHm_Chr1g0369021
rosa_laevigata RLG00000027164
rosa_multiflora Rmu_sc0004250.1_g000030
rosa_roxburghii Rroxscaffold_4G00288080
rosa_rugosa Rorug01G0347000
rosa_samantha Rh1AG353900 Rh1BG317400 Rh1CG331900 Rh1DG348300
rosa_wichuraiana Rw1G031270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 838, 904
AccB1I GGYRCC 1 cut(s) 511
AciI CCGC 6 cut(s) 293, 303, 402, 632, 700, 1056
AclWI GGATC 2 cut(s) 255, 1200
AcsI RAATTY 2 cut(s) 604, 1098
AcuI CTGAAG 3 cut(s) 560, 695, 727
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 4 cut(s) 391, 690, 1121, 1199
AjnI CCWGG 3 cut(s) 433, 1024, 1185
Alw21I GWGCWC 3 cut(s) 214, 447, 926
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 2 cut(s) 255, 1200
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 757, 871, 931
ApeKI GCWGC 3 cut(s) 702, 1053, 1212
ApoI RAATTY 2 cut(s) 604, 1098
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 55, 82
AsuC2I CCSGG 2 cut(s) 262, 940
AsuHPI GGTGA 4 cut(s) 778, 929, 1040, 1075
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 2 cut(s) 55, 82
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 3 cut(s) 145, 184, 970
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 214, 926
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 3 cut(s) 214, 447, 926
BbvI GCAGC 3 cut(s) 714, 1040, 1199
BccI CCATC 7 cut(s) 16, 167, 328, 497, 872, 942, 1111
BceAI ACGGC 1 cut(s) 886
BciT130I CCWGG 3 cut(s) 435, 1026, 1187
BclI TGATCA 1 cut(s) 1240
BcnI CCSGG 2 cut(s) 262, 940
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 6 cut(s) 50, 185, 189, 236, 773, 1163
BfmI CTRYAG 1 cut(s) 856
BfoI RGCGCY 1 cut(s) 515
BisI GCNGC 6 cut(s) 294, 700, 703, 1054, 1057, 1213
BlnI CCTAGG 1 cut(s) 235
BlsI GCNGC 6 cut(s) 295, 701, 704, 1055, 1058, 1214
Bme1390I CCNGG 5 cut(s) 262, 435, 940, 1026, 1187
Bme18I GGWCC 2 cut(s) 55, 82
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 55, 82
BmiI GGNNCC 3 cut(s) 57, 84, 513
BmrFI CCNGG 5 cut(s) 262, 435, 940, 1026, 1187
BmrI ACTGGG 1 cut(s) 1134
BmsI GCATC 2 cut(s) 247, 535
BmtI GCTAGC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 1134
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpuMI CCSGG 2 cut(s) 262, 940
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 2 cut(s) 1152, 1239
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 9 cut(s) 137, 235, 261, 434, 521, 562, 590, 938, 1005
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 2 cut(s) 1152, 1239
BseBI CCWGG 3 cut(s) 435, 1026, 1187
BseDI CCNNGG 9 cut(s) 137, 235, 261, 434, 521, 562, 590, 938, 1005
BseGI GGATG 4 cut(s) 231, 262, 934, 1091
BseJI GATNNNNATC 2 cut(s) 1152, 1239
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 1140
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 3 cut(s) 145, 184, 970
BseXI GCAGC 3 cut(s) 714, 1040, 1199
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 3 cut(s) 759, 873, 933
BshNI GGYRCC 1 cut(s) 511
BsiHKAI GWGCWC 3 cut(s) 214, 447, 926
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 261, 940
BsiWI CGTACG 1 cut(s) 534
BslFI GGGAC 5 cut(s) 15, 41, 68, 388, 533
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 5 cut(s) 15, 41, 68, 388, 533
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 759, 873, 933
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 6 cut(s) 145, 184, 214, 447, 926, 970
Bsp143I GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
BspACI CCGC 6 cut(s) 293, 303, 402, 632, 700, 1056
BspANI GGCC 3 cut(s) 759, 873, 933
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 3 cut(s) 57, 84, 513
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 255, 1200
BspT107I GGYRCC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 1140
BssECI CCNNGG 9 cut(s) 137, 235, 261, 434, 521, 562, 590, 938, 1005
BssMI GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
BssNI GRCGYC 1 cut(s) 512
BssT1I CCWWGG 3 cut(s) 235, 521, 590
Bst2UI CCWGG 3 cut(s) 435, 1026, 1187
Bst4CI ACNGT 7 cut(s) 46, 73, 147, 364, 730, 818, 1220
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 197, 695, 791
BstDSI CCRYGG 1 cut(s) 1005
BstF5I GGATG 4 cut(s) 231, 262, 934, 1091
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 6 cut(s) 69, 250, 360, 1162, 1195, 1243
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
BstMWI GCNNNNNNNGC 2 cut(s) 744, 930
BstNI CCWGG 3 cut(s) 435, 1026, 1187
BstSCI CCNGG 5 cut(s) 260, 433, 938, 1024, 1185
BstSFI CTRYAG 1 cut(s) 856
BstSLI GKGCMC 3 cut(s) 145, 184, 970
BstV1I GCAGC 3 cut(s) 714, 1040, 1199
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
BsuRI GGCC 3 cut(s) 759, 873, 933
BtgI CCRYGG 1 cut(s) 1005
BtgZI GCGATG 1 cut(s) 865
BtsCI GGATG 4 cut(s) 231, 262, 934, 1091
BtsIMutI CAGTG 3 cut(s) 143, 369, 1147
Cac8I GCNNGC 1 cut(s) 190
CciI TCATGA 1 cut(s) 1156
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 55, 82
Csp6I GTAC 1 cut(s) 535
CviAII CATG 3 cut(s) 425, 1060, 1157
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 197, 695, 791
DinI GGCGCC 1 cut(s) 513
DpnI GATC 6 cut(s) 68, 249, 359, 1161, 1194, 1242
DpnII GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
DrdI GACNNNNNNGTC 2 cut(s) 838, 904
DseDI GACNNNNNNGTC 2 cut(s) 838, 904
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 2 cut(s) 212, 924
Eco130I CCWWGG 3 cut(s) 235, 521, 590
Eco147I AGGCCT 1 cut(s) 759
Eco24I GRGCYC 2 cut(s) 214, 926
Eco47I GGWCC 2 cut(s) 55, 82
Eco53kI GAGCTC 2 cut(s) 212, 924
Eco57I CTGAAG 3 cut(s) 560, 695, 727
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 2 cut(s) 212, 924
EcoO109I RGGNCCY 2 cut(s) 55, 82
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 3 cut(s) 433, 1024, 1185
EcoT14I CCWWGG 3 cut(s) 235, 521, 590
EcoT38I GRGCYC 2 cut(s) 214, 926
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
ErhI CCWWGG 3 cut(s) 235, 521, 590
FaeI CATG 3 cut(s) 428, 1063, 1160
FaiI YATR 6 cut(s) 109, 426, 466, 665, 1061, 1158
FaqI GGGAC 5 cut(s) 15, 41, 68, 388, 533
FatI CATG 3 cut(s) 424, 1059, 1156
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 1 cut(s) 1240
Fnu4HI GCNGC 6 cut(s) 294, 700, 703, 1054, 1057, 1213
FokI GGATG 4 cut(s) 218, 269, 921, 1078
FriOI GRGCYC 2 cut(s) 214, 926
Fsp4HI GCNGC 6 cut(s) 294, 700, 703, 1054, 1057, 1213
FspBI CTAG 6 cut(s) 50, 185, 189, 236, 773, 1163
GlaI GCGC 1 cut(s) 513
GluI GCNGC 6 cut(s) 294, 700, 703, 1054, 1057, 1213
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 3 cut(s) 759, 873, 933
HapII CCGG 2 cut(s) 261, 940
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 3 cut(s) 428, 1063, 1160
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 7 cut(s) 414, 546, 779, 827, 839, 1148, 1235
HpaII CCGG 2 cut(s) 261, 940
HphI GGTGA 4 cut(s) 778, 929, 1040, 1075
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 7 cut(s) 419, 566, 614, 809, 844, 928, 1240
Hpy188III TCNNGA 6 cut(s) 50, 1095, 1157, 1163, 1199, 1207
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 2 cut(s) 346, 872
HpyAV CCTTC 6 cut(s) 304, 584, 670, 696, 923, 1160
HpyCH4III ACNGT 7 cut(s) 46, 73, 147, 364, 730, 818, 1220
HpyCH4IV ACGT 2 cut(s) 288, 708
HpyCH4V TGCA 3 cut(s) 355, 1082, 1215
HpyF10VI GCNNNNNNNGC 2 cut(s) 744, 930
HpyF3I CTNAG 3 cut(s) 197, 695, 791
HpySE526I ACGT 2 cut(s) 288, 708
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 3 cut(s) 428, 1063, 1160
HspAI GCGC 1 cut(s) 512
KasI GGCGCC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 1240
Kzo9I GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
LmnI GCTCC 2 cut(s) 209, 217
Lsp1109I GCAGC 3 cut(s) 714, 1040, 1199
LweI GCATC 2 cut(s) 247, 535
MaeI CTAG 6 cut(s) 50, 185, 189, 236, 773, 1163
MaeII ACGT 2 cut(s) 288, 708
MaeIII GTNAC 3 cut(s) 1028, 1181, 1223
MalI GATC 6 cut(s) 68, 249, 359, 1161, 1194, 1242
MboI GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
MboII GAAGA 6 cut(s) 548, 788, 957, 986, 1058, 1187
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 6 cut(s) 145, 184, 214, 447, 926, 970
MluCI AATT 5 cut(s) 34, 604, 956, 1085, 1098
Mly113I GGCGCC 1 cut(s) 512
MlyI GAGTC 4 cut(s) 423, 555, 773, 848
MmeI TCCRAC 1 cut(s) 397
MseI TTAA 6 cut(s) 585, 681, 993, 1034, 1088, 1249
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 261, 940
MspR9I CCNGG 5 cut(s) 262, 435, 940, 1026, 1187
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 3 cut(s) 435, 1026, 1187
MwoI GCNNNNNNNGC 2 cut(s) 744, 930
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 2 cut(s) 262, 940
NdeII GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 428, 1063, 1160
NlaIV GGNNCC 3 cut(s) 57, 84, 513
NmuCI GTSAC 3 cut(s) 1028, 1181, 1223
PagI TCATGA 1 cut(s) 1156
PceI AGGCCT 1 cut(s) 759
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 3 cut(s) 827, 1148, 1235
Pfl23II CGTACG 1 cut(s) 534
PkrI GCNGC 6 cut(s) 295, 701, 704, 1055, 1058, 1214
PleI GAGTC 4 cut(s) 422, 554, 773, 847
PluTI GGCGCC 1 cut(s) 515
PpsI GAGTC 4 cut(s) 422, 554, 773, 847
Ppu21I YACGTR 1 cut(s) 289
PpuMI RGGWCCY 2 cut(s) 55, 82
Psp124BI GAGCTC 2 cut(s) 214, 926
Psp5II RGGWCCY 2 cut(s) 55, 82
Psp6I CCWGG 3 cut(s) 433, 1024, 1185
PspGI CCWGG 3 cut(s) 433, 1024, 1185
PspLI CGTACG 1 cut(s) 534
PspN4I GGNNCC 3 cut(s) 57, 84, 513
PspPI GGNCC 2 cut(s) 55, 82
PspPPI RGGWCCY 2 cut(s) 55, 82
PsrI GAACNNNNNNTAC 2 cut(s) 702, 734
PsuI RGATCY 1 cut(s) 1192
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 2 cut(s) 214, 926
SaqAI TTAA 6 cut(s) 585, 681, 993, 1034, 1088, 1249
SatI GCNGC 6 cut(s) 294, 700, 703, 1054, 1057, 1213
Sau3AI GATC 6 cut(s) 66, 247, 357, 1159, 1192, 1240
Sau96I GGNCC 2 cut(s) 55, 82
SchI GAGTC 4 cut(s) 423, 555, 773, 848
ScrFI CCNGG 5 cut(s) 262, 435, 940, 1026, 1187
SduI GDGCHC 6 cut(s) 145, 184, 214, 447, 926, 970
SfaNI GCATC 2 cut(s) 247, 535
SfcI CTRYAG 1 cut(s) 856
SfoI GGCGCC 1 cut(s) 513
SinI GGWCC 2 cut(s) 55, 82
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 5 cut(s) 34, 604, 956, 1085, 1098
SseBI AGGCCT 1 cut(s) 759
SsiI CCGC 6 cut(s) 293, 303, 402, 632, 700, 1056
SspDI GGCGCC 1 cut(s) 511
SspMI CTAG 6 cut(s) 50, 185, 189, 236, 773, 1163
SstI GAGCTC 2 cut(s) 214, 926
StuI AGGCCT 1 cut(s) 759
StyD4I CCNGG 5 cut(s) 260, 433, 938, 1024, 1185
StyI CCWWGG 3 cut(s) 235, 521, 590
TaaI ACNGT 7 cut(s) 46, 73, 147, 364, 730, 818, 1220
TaiI ACGT 2 cut(s) 291, 711
TaqI TCGA 8 cut(s) 11, 219, 544, 721, 830, 867, 972, 1206
TasI AATT 5 cut(s) 34, 604, 956, 1085, 1098
TauI GCSGC 3 cut(s) 296, 702, 1059
TfiI GAWTC 3 cut(s) 827, 1148, 1235
Tru1I TTAA 6 cut(s) 585, 681, 993, 1034, 1088, 1249
Tru9I TTAA 6 cut(s) 585, 681, 993, 1034, 1088, 1249
TscAI CASTG 3 cut(s) 150, 369, 1147
TseFI GTSAC 3 cut(s) 1028, 1181, 1223
TseI GCWGC 3 cut(s) 702, 1053, 1212
Tsp45I GTSAC 3 cut(s) 1028, 1181, 1223
TspDTI ATGAA 5 cut(s) 17, 134, 146, 180, 652
TspGWI ACGGA 1 cut(s) 994
TspRI CASTG 3 cut(s) 150, 369, 1147
VpaK11BI GGWCC 2 cut(s) 55, 82
XapI RAATTY 2 cut(s) 604, 1098
XbaI TCTAGA 2 cut(s) 49, 1162
XmaJI CCTAGG 1 cut(s) 235
XspI CTAG 6 cut(s) 50, 185, 189, 236, 773, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.