Rh1DG298700

TMEM214, C-terminal, caspase 4 activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017813
Physical Location & Seq
Reverse (-)
52399613 .. 52403824
4212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG298700.1

Sequence Viewer

Length: 804 bp
ATGGGTGATGAAGTTCGCGGACTTTTTCGACCGGGCATTATCTGCAGTGACTTCCGCCCAGTTTCCATGGGTCAAGATGTTCAAGGAGCCAACTGTGGTGAAGATTGCCAATTATTTACTGTTGTAGCGATGGTATTGCAAAGAAAACCTGATGTCTTGATCATTATATTGCCGACATTGAGGGAAACTTCAAAGTATCAAGGACAAGATAACCTTCCAGTAATTGTATGGATGATAGTTCAAGCTAGTGAAGGAGACCTGGCTTTGGCGTTGTATGCATCGACACACAACGTATTGCCTCTAGTTTGTGGCAAAAGTAGTAATCCACAGTCCTGTGATCTTGTTCTCCAGCTAGTTGAGAGAATTTTGTCTATGCCAAAGGCTCGTACCATTTTAGTAAATGGTGCTGTGAGGAAGGGGGAGCATTTGGTGCCACCTTCTGCATTGGATATACTTATAGGAGTTATTTTTCCTGCACCTTCAGCTAGAGTAAAGGATGTGGCTCTTGCTGGCTCACAAGGAAGCAAAGCGATGAAACAAGTTTCACAGCAAATATTGAGTTTTGCTGTTAAGGCTGCCGGAGAAGCAACTATCACCCAGTTAGCACACCATGGAATGCTATTTGTCCCCATTGGGTATACTTTTGGAGCTGGCATGTTCAAGATGGACTCACTACGAGGGGGTTCTCCATATGGTGCTGGTGTTTTTGCTGGCGATGGCTCAAGACGGCCAAGTGAAACAGAGTTGGGGCTTGCAGAGCATCAAGGGAAGTATATGGCAGCAGTAGTCAAGAAGCTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM214

Protein Analysis

267

Amino Acids

28.42

Weight (kDa)

8.58

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017813)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0017851
rosa_laevigata RLG00000020318 RLG00000030040
rosa_rugosa Rorug02G0253100 Rorug03G0048400
rosa_samantha Rh1BG268600 Rh1DG298700 Rh4AG245000 Rh4BG250200 Rh6BG057500 Rh6DG335800
rosa_wichuraiana Rw2G043450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 638
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 18, 55
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 83, 192, 242, 661
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 5 cut(s) 245, 352, 485, 650, 796
AluI AGCT 5 cut(s) 245, 352, 485, 650, 796
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 1 cut(s) 728
ApeKI GCWGC 2 cut(s) 575, 779
ApoI RAATTY 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 17, 110, 586
BanI GGYRCC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 562, 791
BccI CCATC 3 cut(s) 124, 658, 710
BceAI ACGGC 1 cut(s) 743
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 4 cut(s) 246, 302, 353, 486
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 2 cut(s) 576, 780
BlsI GCNGC 2 cut(s) 577, 781
Bme1390I CCNGG 2 cut(s) 33, 260
BmiI GGNNCC 2 cut(s) 88, 432
BmrFI CCNGG 2 cut(s) 33, 260
BmrI ACTGGG 2 cut(s) 53, 592
BmsI GCATC 2 cut(s) 287, 769
BmuI ACTGGG 2 cut(s) 53, 592
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 66, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 3 cut(s) 59, 218, 598
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 66, 610
BseGI GGATG 2 cut(s) 237, 502
BseLI CCNNNNNNNGG 1 cut(s) 265
BseNI ACTGG 3 cut(s) 59, 218, 598
BseXI GCAGC 2 cut(s) 562, 791
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 730
BshNI GGYRCC 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 32, 579
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 1 cut(s) 730
Bso31I GGTCTC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 159, 337
Bsp19I CCATGG 2 cut(s) 66, 610
BspACI CCGC 2 cut(s) 18, 55
BspANI GGCC 1 cut(s) 730
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 88, 432
BspMAI CTGCAG 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 3 cut(s) 59, 218, 598
BssECI CCNNGG 2 cut(s) 66, 610
BssMI GATC 2 cut(s) 159, 337
BssNAI GTATAC 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 66, 610
Bst1107I GTATAC 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 95, 121, 330
BstAPI GCANNNNNTGC 2 cut(s) 42, 430
BstC8I GCNNGC 5 cut(s) 511, 652, 712, 753, 798
BstDSI CCRYGG 2 cut(s) 66, 610
BstF5I GGATG 2 cut(s) 237, 502
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 2 cut(s) 162, 340
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 159, 337
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 7 cut(s) 42, 275, 430, 482, 572, 584, 757
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 2 cut(s) 31, 258
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 562, 791
BstZ17I GTATAC 1 cut(s) 639
BsuRI GGCC 1 cut(s) 730
BtgI CCRYGG 2 cut(s) 66, 610
BtgZI GCGATG 3 cut(s) 143, 545, 729
BtsCI GGATG 2 cut(s) 237, 502
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 5 cut(s) 511, 652, 712, 753, 798
Csp6I GTAC 1 cut(s) 387
CviAII CATG 3 cut(s) 67, 611, 655
CviQI GTAC 1 cut(s) 387
DpnI GATC 2 cut(s) 161, 339
DpnII GATC 2 cut(s) 159, 337
EaeI YGGCCR 1 cut(s) 728
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 66, 610
Eco31I GGTCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 66, 610
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 66, 610
FaeI CATG 3 cut(s) 70, 614, 658
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 611
FatI CATG 3 cut(s) 66, 610, 654
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 2 cut(s) 576, 780
FokI GGATG 2 cut(s) 244, 509
Fsp4HI GCNGC 2 cut(s) 576, 780
FspBI CTAG 4 cut(s) 246, 302, 353, 486
GluI GCNGC 2 cut(s) 576, 780
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 730
HapII CCGG 2 cut(s) 32, 579
Hin1II CATG 3 cut(s) 70, 614, 658
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 1 cut(s) 668
HpaII CCGG 2 cut(s) 32, 579
HphI GGTGA 3 cut(s) 17, 110, 586
Hpy166II GTNNAC 1 cut(s) 639
Hpy188III TCNNGA 5 cut(s) 74, 157, 661, 723, 790
Hpy8I GTNNAC 1 cut(s) 639
HpyAV CCTTC 5 cut(s) 224, 245, 409, 447, 489
HpyCH4III ACNGT 3 cut(s) 95, 121, 330
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 6 cut(s) 45, 139, 278, 443, 476, 755
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 275, 430, 482, 572, 584, 757
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 70, 614, 658
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 337
LmnI GCTCC 3 cut(s) 86, 421, 647
Lsp1109I GCAGC 2 cut(s) 562, 791
LweI GCATC 2 cut(s) 287, 769
MaeI CTAG 4 cut(s) 246, 302, 353, 486
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 161, 339
MboI GATC 2 cut(s) 159, 337
MboII GAAGA 1 cut(s) 113
MluCI AATT 3 cut(s) 110, 222, 363
MlyI GAGTC 1 cut(s) 662
MnlI CCTC 4 cut(s) 174, 309, 405, 671
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 1 cut(s) 570
MspI CCGG 2 cut(s) 32, 579
MspR9I CCNGG 2 cut(s) 33, 260
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 7 cut(s) 42, 275, 430, 482, 572, 584, 757
NciI CCSGG 1 cut(s) 33
NcoI CCATGG 2 cut(s) 66, 610
NdeI CATATG 1 cut(s) 691
NdeII GATC 2 cut(s) 159, 337
NlaIII CATG 3 cut(s) 70, 614, 658
NlaIV GGNNCC 2 cut(s) 88, 432
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 658
PctI GAATGC 1 cut(s) 621
PkrI GCNGC 2 cut(s) 577, 781
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 88, 432
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 2 cut(s) 576, 780
Sau3AI GATC 2 cut(s) 159, 337
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 2 cut(s) 33, 260
SfaNI GCATC 2 cut(s) 287, 769
SfcI CTRYAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 3 cut(s) 110, 222, 363
SsiI CCGC 2 cut(s) 18, 55
SspI AATATT 1 cut(s) 555
SspMI CTAG 4 cut(s) 246, 302, 353, 486
StyD4I CCNGG 2 cut(s) 31, 258
StyI CCWWGG 2 cut(s) 66, 610
TaaI ACNGT 3 cut(s) 95, 121, 330
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 28, 281
TasI AATT 3 cut(s) 110, 222, 363
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 575, 779
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 24, 548
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 363
XceI RCATGY 1 cut(s) 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 638
XspI CTAG 4 cut(s) 246, 302, 353, 486
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.