Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017813

Physical Location & Seq

Genomic Coordinates Reverse (-)

69911869 .. 69913089

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGTGATGAAGTTCACAGACATTTTCGGCCGGGCATTATCGGCAGTGACTTCTGCCCAGTTTTCATGGGTCAAGATGTTCAAGGAGCCAACTGTGGTGAAGATTGCCAATTATTTACTGTTGTAGCAATGGTATTGCAAAGAAAACCTGATGTCTTGATCATTATATTGCCGACATTAAGGGAAACTTCAAAGTATCAAGGACAAGATAACCTTCCAGTAATTGTATGGATGATAGTTCAAGCTAGTGAAGGAGACCTGGCTTTGGCGTTGTATGCATCGGCACACAATGTATTGCCTCTAGTTTGTGGAAAAACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

5.09

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017813)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0017851
rosa_laevigata	RLG00000020318 RLG00000030040
rosa_rugosa	Rorug02G0253100 Rorug03G0048400
rosa_samantha	Rh1BG268600 Rh1DG298700 Rh4AG245000 Rh4BG250200 Rh6BG057500 Rh6DG335800
rosa_wichuraiana	Rw2G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	83, 192, 242
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	17, 110
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	246, 302
Bme1390I	CCNGG	2 cut(s)	33, 260
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	33, 260
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	59, 218
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	59, 218
BseX3I	CGGCCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	59, 218
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	95, 121
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 275
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	31, 258
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	31, 89, 245, 263
CviKI_1	RGCY	4 cut(s)	31, 89, 245, 263
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	29
EagI	CGGCCG	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	1 cut(s)	70
FaiI	YATR	4 cut(s)	68, 167, 229, 276
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 198, 230
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	159
FokI	GGATG	1 cut(s)	244
FspBI	CTAG	2 cut(s)	246, 302
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	70
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	17, 110
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	74, 157
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	224, 245
HpyCH4III	ACNGT	2 cut(s)	95, 121
HpyCH4V	TGCA	2 cut(s)	139, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 275
Hsp92II	CATG	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	6 cut(s)	45, 72, 162, 231, 245, 272
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	246, 302
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	113
MluCI	AATT	2 cut(s)	110, 222
MnlI	CCTC	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	2 cut(s)	179, 322
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	33, 260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	42, 275
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	179, 322
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	33, 260
SetI	ASST	4 cut(s)	151, 216, 247, 261
SfaNI	GCATC	1 cut(s)	287
Sse9I	AATT	2 cut(s)	110, 222
SspMI	CTAG	2 cut(s)	246, 302
StyD4I	CCNGG	2 cut(s)	31, 258
TaaI	ACNGT	2 cut(s)	95, 121
TasI	AATT	2 cut(s)	110, 222
Tru1I	TTAA	2 cut(s)	179, 322
Tru9I	TTAA	2 cut(s)	179, 322
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	24, 55
TspRI	CASTG	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	2 cut(s)	246, 302
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.