Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019925

Physical Location & Seq

Genomic Coordinates Reverse (-)

18927148 .. 18947179

Gene Structure 20032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATGGTGATGGCAGTGAGCCATGGCTGCGACTGGAGTTCGTCAATCATGGAAAGAGGAAATCCAAGATTTAGCTTCTCTCTCATCACCGCAAGTGTAAACTGCCTTGTGTTATTTGTGGCAGAGACAATGAGGGATTCAAAGAATAAAGCTGGTCAAGGAGGCCGTGGGGGTGGAAGTGGATATAGATATGGGCGAGGCCGTGGCGGTGGTAGACACAATTGTGATTCAGCCAATAATGAAAACAACAGTGGGTACAATCGTGAATCAGCCCCTGCTGGTCAGGGTGCTTTTAAGGATGCACCTCCTAAACGGCGTTTCTCTGGTGGGGATGGTGATGGAAGGCCATTTGAAAGGCGTGGCTATGTAACTTACTTTATAATGAATCCTACAAGGCTTGCATTCATTCGCTCAACACTGTGCTGTCATTTCAGGAGGGACCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAATTTATTGATGTTGGCTGTGGAGGTGGAATTCTTTCTGAGCCTTTAGCTCGGATGAGAGCTGCTGTAACAGGAGTTGATGCTGTTAAGAAAAATATCAAGATAGCTCGCTTTCACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

197

Amino Acids

21.4

Weight (kDa)

10.09

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019925)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0436731
rosa_samantha	Rh2AG196100 Rh2DG203800 Rh4AG350100 Rh4DG353000 Rh6CG162700 Rh6DG154300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	214
AciI	CCGC	2 cut(s)	90, 207
AcsI	RAATTY	2 cut(s)	473, 501
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	464, 465
AgsI	TTSAA	3 cut(s)	141, 353, 464
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	75, 152, 521, 533, 578
AluI	AGCT	5 cut(s)	75, 152, 521, 533, 578
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	4 cut(s)	163, 199, 344, 455
ApeKI	GCWGC	2 cut(s)	27, 533
ApoI	RAATTY	2 cut(s)	473, 501
Asp700I	GAANNNNTTC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	439, 456
AsuHPI	GGTGA	3 cut(s)	19, 79, 347
AvaII	GGWCC	1 cut(s)	439
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BanII	GRGCYC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	14, 520
BccI	CCATC	3 cut(s)	4, 326, 332
BceAI	ACGGC	3 cut(s)	150, 186, 329
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	28, 534
BlsI	GCNGC	2 cut(s)	29, 535
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	439, 456
BmiI	GGNNCC	2 cut(s)	440, 441
BmsI	GCATC	2 cut(s)	289, 541
BpmI	CTGGAG	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	22, 166, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 465
Bse1I	ACTGG	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	22, 166, 202
BseGI	GGATG	3 cut(s)	304, 337, 531
BseLI	CCNNNNNNNGG	2 cut(s)	464, 465
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	14, 520
BshFI	GGCC	4 cut(s)	165, 201, 346, 457
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	464, 465
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	165, 201, 346, 457
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	90, 207
BspANI	GGCC	4 cut(s)	165, 201, 346, 457
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	440, 441
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	22, 166, 202
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	251, 420
BstC8I	GCNNGC	2 cut(s)	399, 580
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	3 cut(s)	22, 166, 202
BstF5I	GGATG	3 cut(s)	304, 337, 531
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	14, 520
BsuRI	GGCC	4 cut(s)	165, 201, 346, 457
BtgI	CCRYGG	3 cut(s)	22, 166, 202
BtsCI	GGATG	3 cut(s)	304, 337, 531
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 256, 416
Cac8I	GCNNGC	2 cut(s)	399, 580
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	439, 456
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	23, 49
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	439
EcoO109I	RGGNCCY	2 cut(s)	439, 456
EcoRI	GAATTC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	26, 52
FaiI	YATR	7 cut(s)	24, 50, 186, 192, 366, 380, 592
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	22, 48
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	28, 534
FokI	GGATG	3 cut(s)	311, 344, 538
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	28, 534
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	2 cut(s)	28, 534
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	165, 201, 346, 457
Hin1II	CATG	2 cut(s)	26, 52
HinfI	GANTC	4 cut(s)	137, 227, 266, 385
HphI	GGTGA	3 cut(s)	19, 79, 347
Hpy166II	GTNNAC	2 cut(s)	100, 215
Hpy188I	TCNGA	2 cut(s)	511, 525
Hpy188III	TCNNGA	3 cut(s)	263, 433, 571
Hpy8I	GTNNAC	2 cut(s)	100, 215
HpyAV	CCTTC	2 cut(s)	336, 458
HpyCH4III	ACNGT	2 cut(s)	251, 420
HpyCH4V	TGCA	2 cut(s)	302, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	26, 52
KflI	GGGWCCC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	19, 138, 264, 269, 288, 309, 418, 528
Lsp1109I	GCAGC	2 cut(s)	14, 520
LweI	GCATC	2 cut(s)	289, 541
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	367, 538
MfeI	CAATTG	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	220, 473, 501
MnlI	CCTC	7 cut(s)	50, 126, 155, 191, 315, 429, 488
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	2 cut(s)	294, 558
MslI	CAYNNNNRTG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	22
NlaIII	CATG	2 cut(s)	26, 52
NlaIV	GGNNCC	2 cut(s)	440, 441
OliI	CACNNNNGTG	1 cut(s)	222
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	4 cut(s)	137, 227, 266, 385
PkrI	GCNGC	2 cut(s)	29, 535
PpuMI	RGGWCCY	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	440, 441
PspPI	GGNCC	2 cut(s)	439, 456
PspPPI	RGGWCCY	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	294, 558
SatI	GCNGC	2 cut(s)	28, 534
Sau96I	GGNCC	2 cut(s)	439, 456
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	7 cut(s)	77, 154, 307, 499, 523, 535, 580
SfaNI	GCATC	2 cut(s)	289, 541
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	220, 473, 501
SsiI	CCGC	2 cut(s)	90, 207
SspMI	CTAG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	251, 420
TasI	AATT	3 cut(s)	220, 473, 501
TfiI	GAWTC	4 cut(s)	137, 227, 266, 385
Tru1I	TTAA	2 cut(s)	294, 558
Tru9I	TTAA	2 cut(s)	294, 558
TscAI	CASTG	3 cut(s)	21, 256, 423
TseI	GCWGC	2 cut(s)	27, 533
TspDTI	ATGAA	3 cut(s)	255, 394, 398
TspRI	CASTG	3 cut(s)	21, 256, 423
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	473, 501
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.