Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019925

Physical Location & Seq

Genomic Coordinates Reverse (-)

65850955 .. 65854731

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGGTTTGGAGGGAAGTTGGAGATGGGAATGGTTTTGGATTGAAGGATGTTGCTTCATCTTGTGCAGTGAGGGATTCAAAGAATAAAGCTGGTCAAGGAGGCCGTGGGGGTGGAAGTGGATATGGATATGGGCGAGGGCGTGGCGGTGGTAGATACAATTGTGATTCAGCCAATAATGAAAACAACAGTGGGTACAATCGTGAATCAGCCCCTGCTGGTCAGGGTGCTTTTAAGGATGCACCTCCTAAACGGCATTTCTCTGGTGGGGATGGTGATGGAAGGCCATTTGAAAGGCGTGGCTATGTAACTTACTTTATAATGAATCCTACAAGGCTTGCATTCATTTGCTCAACACTGTGCCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAATTTATTGATGTTGGCTGTGGAGGTGGAATTCTTTCTGAGCCTTTAGCTCGGATGAGAGCTGCTGTAACAGGAGTTGATGCTGTTAAGAAAAATATCAAGATAGCTCGCTTTCACTCAGTATGGTCATTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

182

Amino Acids

19.55

Weight (kDa)

9.88

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019925)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0436731
rosa_samantha	Rh2AG196100 Rh2DG203800 Rh4AG350100 Rh4DG353000 Rh6CG162700 Rh6DG154300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	374, 387
AcsI	RAATTY	2 cut(s)	413, 441
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	404, 405
AgsI	TTSAA	4 cut(s)	46, 81, 293, 404
AluBI	AGCT	4 cut(s)	92, 461, 473, 518
AluI	AGCT	4 cut(s)	92, 461, 473, 518
AlwI	GGATC	2 cut(s)	374, 387
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	103, 284, 395
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	413, 441
Asp700I	GAANNNNTTC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	287
BaeI	ACNNNNGTAYC	4 cut(s)	148, 181, 187, 220
BamHI	GGATCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	3 cut(s)	20, 266, 272
BceAI	ACGGC	3 cut(s)	90, 269, 348
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	2 cut(s)	229, 481
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 405
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	4 cut(s)	55, 244, 277, 471
BseLI	CCNNNNNNNGG	2 cut(s)	404, 405
BseMII	CTCAG	2 cut(s)	441, 543
BseXI	GCAGC	1 cut(s)	460
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	105, 286, 397
BslI	CCNNNNNNNGG	2 cut(s)	404, 405
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	105, 286, 397
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	105, 286, 397
BspCNI	CTCAG	2 cut(s)	442, 542
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	374, 387
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	191, 360
BstC8I	GCNNGC	2 cut(s)	339, 520
BstDEI	CTNAG	2 cut(s)	450, 529
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	55, 244, 277, 471
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	105, 286, 397
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	55, 244, 277, 471
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	75, 196, 356
Cac8I	GCNNGC	2 cut(s)	339, 520
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	196
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	450, 529
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	411
FaiI	YATR	5 cut(s)	126, 132, 306, 320, 535
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	4 cut(s)	62, 251, 284, 478
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	3 cut(s)	105, 286, 397
HinfI	GANTC	4 cut(s)	77, 167, 206, 325
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	451, 465
Hpy188III	TCNNGA	3 cut(s)	203, 373, 511
HpyAV	CCTTC	3 cut(s)	40, 276, 398
HpyCH4III	ACNGT	2 cut(s)	191, 360
HpyCH4V	TGCA	3 cut(s)	68, 242, 341
HpyF3I	CTNAG	2 cut(s)	450, 529
Kzo9I	GATC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	78, 204, 209, 228, 249, 358, 468
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	2 cut(s)	229, 481
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	307, 478
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	160
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	160, 413, 441
MnlI	CCTC	7 cut(s)	6, 66, 95, 131, 255, 369, 428
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	3 cut(s)	234, 498, 547
MunI	CAATTG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	341
NdeII	GATC	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	4 cut(s)	77, 167, 206, 325
PkrI	GCNGC	1 cut(s)	475
PsiI	TTATAA	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	234, 498, 547
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	6 cut(s)	94, 247, 439, 463, 475, 520
SfaNI	GCATC	2 cut(s)	229, 481
Sse9I	AATT	3 cut(s)	160, 413, 441
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	191, 360
TasI	AATT	3 cut(s)	160, 413, 441
TfiI	GAWTC	4 cut(s)	77, 167, 206, 325
Tru1I	TTAA	3 cut(s)	234, 498, 547
Tru9I	TTAA	3 cut(s)	234, 498, 547
TscAI	CASTG	3 cut(s)	75, 196, 363
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	48, 195, 334, 338
TspRI	CASTG	3 cut(s)	75, 196, 363
XapI	RAATTY	2 cut(s)	413, 441
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.