Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019925

Physical Location & Seq

Genomic Coordinates Forward (+)

23112992 .. 23122254

Gene Structure 9263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAATTGAGGGATTCAAAGAATAAAGCTGGTCAAGGAGGCCGTGGGGGTGGAAGTGGATATGGATATGGGCGAGGCCGTGGCGGTGGTAGATACAATTGTGATTCAGCCAATAATGAAAACAACAGTGGGTACAATCGTGAATCAGCCCCTGCTGGTCAGGGTGCTTTTAAGGATGCACCTCCTAAACGGCGTTTCTCTGGTGGGGATGGTGATGGAAGGCCATTTGAAAGGCGTGACTATGTAACTTACTTTATAATGAATCCTACAAGGCTTGCATTCATTCGCTCAACACTGTGCCGTCATTTCAGGAGGGACCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAATTTATTGATGTTGGCTGTGGAGGTGGAATTCTTTCTAAGCCTTTAGCTCGGATGAGAGCTGCTGTAACAGGAGTTGATGCTGTTAAGAAAAATATCAAGATAGCTCGCTTTCACTCAGTATGGATGTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

161

Amino Acids

17.6

Weight (kDa)

10.42

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	114 - 155	8.5e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019925)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0436731
rosa_samantha	Rh2AG196100 Rh2DG203800 Rh4AG350100 Rh4DG353000 Rh6CG162700 Rh6DG154300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	350, 378
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	341, 342
AgsI	TTSAA	3 cut(s)	18, 230, 341
AluBI	AGCT	4 cut(s)	29, 398, 410, 455
AluI	AGCT	4 cut(s)	29, 398, 410, 455
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	40, 76, 221, 332
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	350, 378
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	316, 333
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	4 cut(s)	85, 118, 124, 157
BanII	GRGCYC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	203, 209
BceAI	ACGGC	4 cut(s)	27, 63, 206, 285
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	316, 333
BmiI	GGNNCC	2 cut(s)	317, 318
BmsI	GCATC	2 cut(s)	166, 418
BsaJI	CCNNGG	2 cut(s)	43, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 342
BseDI	CCNNGG	2 cut(s)	43, 79
BseGI	GGATG	4 cut(s)	181, 214, 408, 480
BseLI	CCNNNNNNNGG	2 cut(s)	341, 342
BseMII	CTCAG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	4 cut(s)	42, 78, 223, 334
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	341, 342
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	42, 78, 223, 334
Bsp1286I	GDGCHC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	4 cut(s)	42, 78, 223, 334
BspCNI	CTCAG	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	317, 318
BssECI	CCNNGG	2 cut(s)	43, 79
Bst4CI	ACNGT	2 cut(s)	128, 297
BstC8I	GCNNGC	2 cut(s)	276, 457
BstDEI	CTNAG	2 cut(s)	387, 466
BstDSI	CCRYGG	2 cut(s)	43, 79
BstF5I	GGATG	4 cut(s)	181, 214, 408, 480
BstV1I	GCAGC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	42, 78, 223, 334
BtgI	CCRYGG	2 cut(s)	43, 79
BtsCI	GGATG	4 cut(s)	181, 214, 408, 480
BtsIMutI	CAGTG	2 cut(s)	133, 293
Cac8I	GCNNGC	2 cut(s)	276, 457
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	316, 333
Csp6I	GTAC	1 cut(s)	133
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	387, 466
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	316
EcoO109I	RGGNCCY	2 cut(s)	316, 333
EcoRI	GAATTC	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	348
FaiI	YATR	5 cut(s)	63, 69, 243, 257, 472
FaqI	GGGAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	3 cut(s)	188, 221, 415
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	42, 78, 223, 334
HinfI	GANTC	4 cut(s)	14, 104, 143, 262
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	402, 481
Hpy188III	TCNNGA	3 cut(s)	140, 310, 448
HpyAV	CCTTC	2 cut(s)	213, 335
HpyCH4III	ACNGT	2 cut(s)	128, 297
HpyCH4V	TGCA	2 cut(s)	179, 278
HpyF3I	CTNAG	2 cut(s)	387, 466
KflI	GGGWCCC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	15, 141, 146, 165, 186, 295, 405
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	166, 418
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	236, 244, 415
MfeI	CAATTG	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	4 cut(s)	5, 97, 350, 378
MnlI	CCTC	6 cut(s)	3, 32, 68, 192, 306, 365
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	2 cut(s)	171, 435
MunI	CAATTG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	317, 318
NmuCI	GTSAC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	4 cut(s)	14, 104, 143, 262
PkrI	GCNGC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	316
PsiI	TTATAA	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	317, 318
PspPI	GGNCC	2 cut(s)	316, 333
PspPPI	RGGWCCY	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	171, 435
SatI	GCNGC	1 cut(s)	411
Sau96I	GGNCC	2 cut(s)	316, 333
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	6 cut(s)	31, 184, 376, 400, 412, 457
SfaNI	GCATC	2 cut(s)	166, 418
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	4 cut(s)	5, 97, 350, 378
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	128, 297
TasI	AATT	4 cut(s)	5, 97, 350, 378
TfiI	GAWTC	4 cut(s)	14, 104, 143, 262
Tru1I	TTAA	2 cut(s)	171, 435
Tru9I	TTAA	2 cut(s)	171, 435
TscAI	CASTG	2 cut(s)	133, 300
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	17, 132, 271, 275
TspRI	CASTG	2 cut(s)	133, 300
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	350, 378
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.