Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019925

Physical Location & Seq

Genomic Coordinates Reverse (-)

57437403 .. 57438886

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG353000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGTATCTTCTTGTTGATCAGTTATATGTATCAGGAAAAGCCTTCTCCCGTCTTTTGAGGGATTCAAAGAATAAAGCTGGTCAAGGAGGCCGTGGGGGTGGAAGTGGATATGGATATGGGCGAGGGCGTGGCGGTGGTAGATACAATTGTGATTCAGCCAATAATGAAAACAACAGTGGGTACAATCGTGAATCAGCCCCTGCTGGTCAGGGTGCTTTTAAGGATGCACCTCCTAAACGGCATTTCTCTGGTGGGGATGGTGATGGAAGGCCATTTGAAAGGCGTGGCTATGTAACTTACTTTATAATGAATCCTACAAGGCTTGCATTCATTTGCTCAACACTGTGCCGTCATTTCAGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAATTTATTGATGTTGGCTGTGGAGGTGGAATTCTTTCTGAGCCTTTAGCTCGGATGAGAGCTGCTGTAACAGGAGTTGATGCTGTTAAGAAAAATATCAAGATAGCTCGCTTTCACTCAGTATGGTCATTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

217

Amino Acids

23.31

Weight (kDa)

10.09

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 48	1.4e-12	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019925)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0436731
rosa_samantha	Rh2AG196100 Rh2DG203800 Rh4AG350100 Rh4DG353000 Rh6CG162700 Rh6DG154300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	3 cut(s)	37, 479, 492
AcsI	RAATTY	3 cut(s)	86, 518, 546
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	58, 509, 510
AgsI	TTSAA	3 cut(s)	186, 398, 509
AluBI	AGCT	5 cut(s)	110, 197, 566, 578, 623
AluI	AGCT	5 cut(s)	110, 197, 566, 578, 623
AlwI	GGATC	3 cut(s)	37, 479, 492
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	4 cut(s)	99, 208, 389, 500
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	3 cut(s)	86, 518, 546
Asp700I	GAANNNNTTC	2 cut(s)	86, 550
AspS9I	GGNCC	3 cut(s)	4, 100, 501
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	4 cut(s)	253, 286, 292, 325
BamHI	GGATCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	371, 377
BceAI	ACGGC	3 cut(s)	195, 374, 453
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	3 cut(s)	15, 104, 498
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 100, 501
BmiI	GGNNCC	3 cut(s)	40, 49, 486
BmsI	GCATC	2 cut(s)	334, 586
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 509, 510
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	3 cut(s)	349, 382, 576
BseLI	CCNNNNNNNGG	3 cut(s)	58, 509, 510
BseMII	CTCAG	2 cut(s)	546, 648
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	565
BshFI	GGCC	4 cut(s)	101, 210, 391, 502
BslI	CCNNNNNNNGG	3 cut(s)	58, 509, 510
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	4 cut(s)	101, 210, 391, 502
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	29, 136, 484
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	4 cut(s)	101, 210, 391, 502
BspCNI	CTCAG	2 cut(s)	547, 647
BspLI	GGNNCC	3 cut(s)	40, 49, 486
BspPI	GGATC	3 cut(s)	37, 479, 492
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	29, 136, 484
Bst4CI	ACNGT	2 cut(s)	296, 465
BstC8I	GCNNGC	3 cut(s)	112, 444, 625
BstDEI	CTNAG	2 cut(s)	555, 634
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	349, 382, 576
BstKTI	GATC	3 cut(s)	32, 139, 487
BstMBI	GATC	3 cut(s)	29, 136, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	29, 484
BstYI	RGATCY	2 cut(s)	29, 484
BsuRI	GGCC	4 cut(s)	101, 210, 391, 502
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	349, 382, 576
BtsIMutI	CAGTG	2 cut(s)	301, 461
Cac8I	GCNNGC	3 cut(s)	112, 444, 625
CaiI	CAGNNNCTG	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	4, 100, 501
Csp6I	GTAC	1 cut(s)	301
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	555, 634
DpnI	GATC	3 cut(s)	31, 138, 486
DpnII	GATC	3 cut(s)	29, 136, 484
Eco24I	GRGCYC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	516
FaiI	YATR	7 cut(s)	145, 147, 231, 237, 411, 425, 640
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	3 cut(s)	356, 389, 583
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	3 cut(s)	15, 104, 498
GluI	GCNGC	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	101, 210, 391, 502
HinfI	GANTC	4 cut(s)	182, 272, 311, 430
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	92, 556, 570
Hpy188III	TCNNGA	4 cut(s)	153, 308, 478, 616
HpyAV	CCTTC	3 cut(s)	172, 381, 503
HpyCH4III	ACNGT	2 cut(s)	296, 465
HpyCH4V	TGCA	3 cut(s)	71, 347, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	555, 634
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	29, 136, 484
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	2 cut(s)	334, 586
MaeI	CTAG	3 cut(s)	15, 104, 498
MaeIII	GTNAC	2 cut(s)	412, 583
MalI	GATC	3 cut(s)	31, 138, 486
MboI	GATC	3 cut(s)	29, 136, 484
MboII	GAAGA	1 cut(s)	119
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	2 cut(s)	29, 484
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	4 cut(s)	86, 265, 518, 546
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	171, 200, 236, 360, 474, 533
MroXI	GAANNNNTTC	2 cut(s)	86, 550
MseI	TTAA	3 cut(s)	339, 603, 652
MunI	CAATTG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	29, 136, 484
NlaIV	GGNNCC	3 cut(s)	40, 49, 486
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	2 cut(s)	86, 550
PfeI	GAWTC	4 cut(s)	182, 272, 311, 430
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	40, 49, 486
PspPI	GGNCC	3 cut(s)	4, 100, 501
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	29, 484
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	339, 603, 652
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	3 cut(s)	29, 136, 484
Sau96I	GGNCC	3 cut(s)	4, 100, 501
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	7 cut(s)	112, 199, 352, 544, 568, 580, 625
SfaNI	GCATC	2 cut(s)	334, 586
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	86, 265, 518, 546
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	3 cut(s)	15, 104, 498
TaaI	ACNGT	2 cut(s)	296, 465
TasI	AATT	4 cut(s)	86, 265, 518, 546
TfiI	GAWTC	4 cut(s)	182, 272, 311, 430
Tru1I	TTAA	3 cut(s)	339, 603, 652
Tru9I	TTAA	3 cut(s)	339, 603, 652
TscAI	CASTG	2 cut(s)	301, 468
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	300, 439, 443
TspRI	CASTG	2 cut(s)	301, 468
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	86, 518, 546
XmnI	GAANNNNTTC	2 cut(s)	86, 550
XspI	CTAG	3 cut(s)	15, 104, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.