Rh2DG395800

PX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008247
Physical Location & Seq
Forward (+)
57552378 .. 57560422
8045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG395800.1

Sequence Viewer

Length: 1821 bp
ATGAGCATGCCTGCTGCCTTTTCATTTATTTGCAACCATAACTTTGTTAGTTTCGCTATTAACATTTACAGAGAACAGTTTTATAGGGTTCAAGTTGGTCTACAATCACCGGAAGGAATCACAACCACTCGAGGGATATTACGAAGATTTAATGATTTTCTAAAGCTATTTTCTGAACTTAAAAAGGCATTCCCCCTGAAAGATCTTCCTCCAGCTCCTCCAAAGGGGTTTCTGAGAATGAAAAGTCGGATACTATTGGAAGAGCGAAGGTGTTCTTTGGAGGATTGGATAGAAAAGCTGTTATCAGACATCGATATATCAAGAAGTGTGTTGGTTGCAACCTTTCTAGAGCTGGAAGCTGCTGCGAGGTCTTCATTCAATGATCCGCAGCTAATTTCAGATGTAAACTCAACAAGTGGCACAGCTCCGTCTTCTTTGTTACAAACCCAATCAGATCTCTCTGTTGTTGCTGGTAGCTCATCTGTCACATCAGATAATGGTAATGATACTCCATACGAGGTATCTGAGCTTGGAACACCAAGGTATGGAGATGATAGCTTTGCTAATCTTGCCATGGAGCATTCGACATCTGATCAGGACTTAGATGATTCAATAGATACATCTGTTAAGGTTGGCCTATTTAACCAGAAATCTGTTCGGGAAAGCCTAGAAAGGCGCTCCAGGCGCCAAATTTCTGGTAGAAGTAATGCGAATACTATAGACAAGGAGCAAACAAGTGAAAATACCTATGGTTCTAAACCTCTTTGCATGGATGGAACCGAGTTCTTTGTAGAACCTGAGGAAAGGAAGAGGGATGGCCATGCTCAAGGACCATCAACAGAGAGTTTTGGAAGTGATACTTCTACTTTGCGGGTGGGCAATTTATGTGGTGATGGCTCCCTCAACCTTCCTGAAAGTTCTGAAGCTCCTACAATTGCAGATACTCATGACAACTCAGATTTGAAGTTTTCAAGGGCTATACTAGCTGCTTTTCCACATGATGAGCGACAAAAATTAAACAGAGTTCTGATTACATTGCAACAGAGATTAGGAACAGCAAAAATTGACATCGAGGATCTTATAGCAAGATTGAATCAAGAAGTTGCTGTGAGACAATTTCTCACAACAAAGGTTAAAGATCTGGAAGTGGAACTTGAAACTACCCAGCAAAATTGTAAAGAAAATATTCAGCAGGCTGTCTTAAATGAAAAAGAAAGATTTACCCAAATGCAGTGGGATATGGAGGAACTGCGAAGGAAGTGCTTGGACTTGGAATTACAATTGAGATCTGAGCAGGATGCAAGGGAGCATTCGGAGTTAACAAAAATTTCTATCATTCAGGAGAATGACATATTGATACAGGAGTTGGATGTCTCTAGGCGGCAGCTTGACAACTTGCAGAAACTTCATGAAGAGTTTGAGGTGAAATCAAAGACAGATGTAAAGCTACTTGTTAAAGAGGTCAAATCTCTTCGAAATTCACAATCAGAACTGAAGCAGGAACTCAGTCGATTGATGAAGGAAAAATTAGAAGTAGAGAGAACTCTTCAAAAAGAAAAGCGAAGAATAGAGTGTGCAGCAACTACTAACGCAAAGCTGCTGCATGAATGTGAAATACTTCGCAGTCGGCTTCAAGAATGTAGTGTCAATTTTCTGGTTGAAGAGGAAGATAAACTGATCTTGGATACTTCATCACCATCTGATGCTGTTGATCTACTGACAACGTCTGACAATCGAATTGGTCTTCTTCTTGCAGAGGTATGCTTTGCAACTGTAGTTGGTGTCTGTGTCTTGTATTTGTGCAATGACTTCTATCAGTAA

Protein Analysis

606

Amino Acids

68.67

Weight (kDa)

5.01

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 44 - 117 1.4e-12 PX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 684
AccB7I CCANNNNNTGG 1 cut(s) 545
AccI GTMKAC 1 cut(s) 100
AciI CCGC 3 cut(s) 386, 871, 1381
AclWI GGATC 2 cut(s) 377, 1083
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 3 cut(s) 690, 1326, 1477
AcuI CTGAAG 2 cut(s) 942, 1514
AcyI GRCGYC 1 cut(s) 685
AfiI CCNNNNNNNGG 3 cut(s) 132, 224, 545
AjnI CCWGG 1 cut(s) 680
Alw26I GTCTC 2 cut(s) 1105, 1378
AlwI GGATC 2 cut(s) 377, 1083
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 634, 817
ApeKI GCWGC 9 cut(s) 14, 359, 362, 388, 986, 1384, 1577, 1597, 1600
ApoI RAATTY 3 cut(s) 690, 1326, 1477
Asp700I GAANNNNTTC 3 cut(s) 271, 1185, 1617
AspLEI GCGC 2 cut(s) 678, 687
AspS9I GGNCC 1 cut(s) 830
AsuHPI GGTGA 4 cut(s) 99, 902, 1435, 1686
AsuII TTCGAA 1 cut(s) 1474
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 830
AxyI CCTNAGG 1 cut(s) 798
BaeI ACNNNNGTAYC 4 cut(s) 609, 642, 1349, 1382
BalI TGGCCA 1 cut(s) 819
BanI GGYRCC 1 cut(s) 684
BbsI GAAGAC 3 cut(s) 363, 423, 1736
BbvI GCAGC 8 cut(s) 346, 349, 400, 973, 1396, 1584, 1587, 1589
BccI CCATC 5 cut(s) 767, 809, 841, 887, 1705
BcgI CGANNNNNNTGC 2 cut(s) 1242, 1276
BciT130I CCWGG 1 cut(s) 682
BciVI GTATCC 2 cut(s) 243, 1678
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 1105, 1378
BfaI CTAG 4 cut(s) 347, 668, 983, 1377
BfmI CTRYAG 2 cut(s) 717, 1773
BfoI RGCGCY 2 cut(s) 679, 688
BfuI GTATCC 2 cut(s) 243, 1678
BglII AGATCT 4 cut(s) 202, 454, 1138, 1286
Bme1390I CCNGG 1 cut(s) 682
Bme18I GGWCC 1 cut(s) 830
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 3 cut(s) 686, 778, 898
BmrFI CCNGG 1 cut(s) 682
BmsI GCATC 2 cut(s) 1288, 1693
BpiI GAAGAC 3 cut(s) 363, 423, 1736
BpmI CTGGAG 2 cut(s) 195, 664
Bpu14I TTCGAA 1 cut(s) 1474
BpuEI CTTGAG 1 cut(s) 810
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 685
BsaJI CCNNGG 2 cut(s) 539, 573
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 224, 545
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 2 cut(s) 1034, 1810
BseBI CCWGG 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 539, 573
BseGI GGATG 4 cut(s) 778, 820, 1303, 1375
BseLI CCNNNNNNNGG 3 cut(s) 132, 224, 545
BseMI GCAATG 2 cut(s) 1034, 1810
BseMII CTCAG 6 cut(s) 224, 516, 789, 969, 1281, 1519
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 8 cut(s) 346, 349, 400, 973, 1396, 1584, 1587, 1589
BseYI CCCAGC 1 cut(s) 1164
BsgI GTGCAG 1 cut(s) 1596
BshFI GGCC 2 cut(s) 636, 819
BshNI GGYRCC 1 cut(s) 684
BshVI ATCGAT 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 132, 224, 545
BsmAI GTCTC 2 cut(s) 1105, 1378
BsmI GAATGC 3 cut(s) 188, 580, 1309
BsnI GGCC 2 cut(s) 636, 819
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 1474
Bsp143I GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 3 cut(s) 386, 871, 1381
BspANI GGCC 2 cut(s) 636, 819
BspCNI CTCAG 6 cut(s) 225, 517, 790, 968, 1282, 1518
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 2 cut(s) 946, 1408
BspLI GGNNCC 3 cut(s) 686, 778, 898
BspPI GGATC 2 cut(s) 377, 1083
BspQI GCTCTTC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 1474
BspT107I GGYRCC 1 cut(s) 684
BsrDI GCAATG 2 cut(s) 1034, 1810
BssECI CCNNGG 2 cut(s) 539, 573
BssMI GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
BssNI GRCGYC 1 cut(s) 685
BssT1I CCWWGG 2 cut(s) 539, 573
Bst2UI CCWGG 1 cut(s) 682
Bst4CI ACNGT 2 cut(s) 78, 1774
Bst6I CTCTTC 6 cut(s) 255, 803, 1407, 1476, 1551, 1656
BstACI GRCGYC 1 cut(s) 685
BstBI TTCGAA 1 cut(s) 1474
BstC8I GCNNGC 3 cut(s) 8, 12, 1194
BstDEI CTNAG 7 cut(s) 233, 525, 601, 798, 955, 1290, 1505
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 778, 820, 1303, 1375
BstH2I RGCGCY 2 cut(s) 679, 688
BstHHI GCGC 2 cut(s) 678, 687
BstKTI GATC 9 cut(s) 205, 385, 457, 595, 1078, 1141, 1289, 1680, 1714
BstMAI GTCTC 2 cut(s) 1105, 1378
BstMBI GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
BstMWI GCNNNNNNNGC 4 cut(s) 569, 682, 684, 983
BstNI CCWGG 1 cut(s) 682
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 680
BstSFI CTRYAG 2 cut(s) 717, 1773
BstV1I GCAGC 8 cut(s) 346, 349, 400, 973, 1396, 1584, 1587, 1589
BstV2I GAAGAC 3 cut(s) 363, 423, 1736
BstX2I RGATCY 5 cut(s) 202, 454, 1075, 1138, 1286
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 5 cut(s) 202, 454, 1075, 1138, 1286
Bsu15I ATCGAT 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 798
BsuI GTATCC 2 cut(s) 243, 1678
BsuRI GGCC 2 cut(s) 636, 819
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 4 cut(s) 778, 820, 1303, 1375
BtsI GCAGTG 1 cut(s) 1238
BtsIMutI CAGTG 1 cut(s) 1238
Cac8I GCNNGC 3 cut(s) 8, 12, 1194
CciI TCATGA 2 cut(s) 946, 1408
CfoI GCGC 2 cut(s) 678, 687
Cfr13I GGNCC 1 cut(s) 830
ClaI ATCGAT 1 cut(s) 312
CspCI CAANNNNNGTGG 4 cut(s) 868, 903, 1214, 1249
CviAII CATG 8 cut(s) 7, 574, 769, 821, 947, 998, 1409, 1604
DdeI CTNAG 7 cut(s) 233, 525, 601, 798, 955, 1290, 1505
DinI GGCGCC 1 cut(s) 686
DpnI GATC 9 cut(s) 204, 384, 456, 594, 1077, 1140, 1288, 1679, 1713
DpnII GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 6 cut(s) 255, 803, 1407, 1476, 1551, 1656
EarI CTCTTC 6 cut(s) 255, 803, 1407, 1476, 1551, 1656
Eco130I CCWWGG 2 cut(s) 539, 573
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 942, 1514
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 680
EcoT14I CCWWGG 2 cut(s) 539, 573
EgeI GGCGCC 1 cut(s) 686
EheI GGCGCC 1 cut(s) 686
ErhI CCWWGG 2 cut(s) 539, 573
FaeI CATG 8 cut(s) 10, 577, 772, 824, 950, 1001, 1412, 1607
FalI AAGNNNNNCTT 6 cut(s) 259, 291, 844, 876, 1137, 1169
FatI CATG 8 cut(s) 6, 573, 768, 820, 946, 997, 1408, 1603
FauI CCCGC 1 cut(s) 864
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 100
FokI GGATG 4 cut(s) 785, 827, 1310, 1382
FspBI CTAG 4 cut(s) 347, 668, 983, 1377
GlaI GCGC 2 cut(s) 677, 686
GsaI CCCAGC 1 cut(s) 1168
GsuI CTGGAG 2 cut(s) 195, 664
HaeII RGCGCY 2 cut(s) 679, 688
HaeIII GGCC 2 cut(s) 636, 819
HapII CCGG 1 cut(s) 110
HhaI GCGC 2 cut(s) 678, 687
Hin1I GRCGYC 1 cut(s) 685
Hin1II CATG 8 cut(s) 10, 577, 772, 824, 950, 1001, 1412, 1607
Hin6I GCGC 2 cut(s) 676, 685
HinP1I GCGC 2 cut(s) 676, 685
HincII GTYRAC 1 cut(s) 1320
HindII GTYRAC 1 cut(s) 1320
HinfI GANTC 3 cut(s) 117, 608, 1093
HpaI GTTAAC 1 cut(s) 1320
HpaII CCGG 1 cut(s) 110
HphI GGTGA 4 cut(s) 99, 902, 1435, 1686
Hpy166II GTNNAC 3 cut(s) 101, 406, 1320
Hpy8I GTNNAC 3 cut(s) 101, 406, 1320
HpyAV CCTTC 5 cut(s) 107, 261, 917, 1248, 1513
HpyCH4III ACNGT 2 cut(s) 78, 1774
HpyCH4IV ACGT 1 cut(s) 1724
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 682, 684, 983
HpyF3I CTNAG 7 cut(s) 233, 525, 601, 798, 955, 1290, 1505
HpySE526I ACGT 1 cut(s) 1724
Hsp92I GRCGYC 1 cut(s) 685
Hsp92II CATG 8 cut(s) 10, 577, 772, 824, 950, 1001, 1412, 1607
HspAI GCGC 2 cut(s) 676, 685
KasI GGCGCC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 592
KspAI GTTAAC 1 cut(s) 1320
Kzo9I GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 8 cut(s) 220, 430, 577, 683, 727, 902, 931, 1306
Lsp1109I GCAGC 8 cut(s) 346, 349, 400, 973, 1396, 1584, 1587, 1589
LweI GCATC 2 cut(s) 1288, 1693
MaeI CTAG 4 cut(s) 347, 668, 983, 1377
MaeII ACGT 1 cut(s) 1724
MaeIII GTNAC 2 cut(s) 438, 484
MalI GATC 9 cut(s) 204, 384, 456, 594, 1077, 1140, 1288, 1679, 1713
MboI GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
MfeI CAATTG 2 cut(s) 933, 1280
MflI RGATCY 5 cut(s) 202, 454, 1075, 1138, 1286
MlsI TGGCCA 1 cut(s) 819
MluNI TGGCCA 1 cut(s) 819
Mly113I GGCGCC 1 cut(s) 685
MmeI TCCRAC 2 cut(s) 227, 1347
Mox20I TGGCCA 1 cut(s) 819
MroXI GAANNNNTTC 3 cut(s) 271, 1185, 1617
MscI TGGCCA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 1608
Msp20I TGGCCA 1 cut(s) 819
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 682
MunI CAATTG 2 cut(s) 933, 1280
Mva1269I GAATGC 3 cut(s) 188, 580, 1309
MvaI CCWGG 1 cut(s) 682
MwoI GCNNNNNNNGC 4 cut(s) 569, 682, 684, 983
NarI GGCGCC 1 cut(s) 685
NcoI CCATGG 1 cut(s) 573
NdeII GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
NlaIII CATG 8 cut(s) 10, 577, 772, 824, 950, 1001, 1412, 1607
NlaIV GGNNCC 3 cut(s) 686, 778, 898
NmuCI GTSAC 1 cut(s) 484
NspI RCATGY 1 cut(s) 10
NspV TTCGAA 1 cut(s) 1474
PaeI GCATGC 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 129
PagI TCATGA 2 cut(s) 946, 1408
PciSI GCTCTTC 1 cut(s) 255
PctI GAATGC 3 cut(s) 188, 580, 1309
PdmI GAANNNNTTC 3 cut(s) 271, 1185, 1617
PfeI GAWTC 3 cut(s) 117, 608, 1093
PflFI GACNNNGTC 1 cut(s) 1723
PflMI CCANNNNNTGG 1 cut(s) 545
PluTI GGCGCC 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 1164
PspGI CCWGG 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 686, 778, 898
PspPI GGNCC 1 cut(s) 830
PspXI VCTCGAGB 1 cut(s) 129
PsuI RGATCY 5 cut(s) 202, 454, 1075, 1138, 1286
PsyI GACNNNGTC 1 cut(s) 1723
RseI CAYNNNNRTG 1 cut(s) 1608
SapI GCTCTTC 1 cut(s) 255
Sau3AI GATC 9 cut(s) 202, 382, 454, 592, 1075, 1138, 1286, 1677, 1711
Sau96I GGNCC 1 cut(s) 830
ScrFI CCNGG 1 cut(s) 682
SfaNI GCATC 2 cut(s) 1288, 1693
SfcI CTRYAG 2 cut(s) 717, 1773
SfoI GGCGCC 1 cut(s) 686
Sfr274I CTCGAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 1474
SinI GGWCC 1 cut(s) 830
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 1608
SmlI CTYRAG 2 cut(s) 129, 825
SmoI CTYRAG 2 cut(s) 129, 825
SphI GCATGC 1 cut(s) 10
SsiI CCGC 3 cut(s) 386, 871, 1381
SspDI GGCGCC 1 cut(s) 684
SspI AATATT 1 cut(s) 1186
SspMI CTAG 4 cut(s) 347, 668, 983, 1377
StyD4I CCNGG 1 cut(s) 680
StyI CCWWGG 2 cut(s) 539, 573
TaaI ACNGT 2 cut(s) 78, 1774
TaiI ACGT 1 cut(s) 1727
TaqI TCGA 7 cut(s) 130, 312, 584, 1071, 1474, 1510, 1735
TauI GCSGC 1 cut(s) 1384
TfiI GAWTC 3 cut(s) 117, 608, 1093
TscAI CASTG 1 cut(s) 1238
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 9 cut(s) 14, 359, 362, 388, 986, 1384, 1577, 1597, 1600
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 9 cut(s) 12, 254, 363, 1221, 1397, 1425, 1532, 1620, 1680
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 1238
Tth111I GACNNNGTC 1 cut(s) 1723
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 3 cut(s) 690, 1326, 1477
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 100
XmnI GAANNNNTTC 3 cut(s) 271, 1185, 1617
XspI CTAG 4 cut(s) 347, 668, 983, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.