Rh3AG063800

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0019914
Physical Location & Seq
Forward (+)
4403223 .. 4403597
375 bp
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UTR
Exon/CDS
Intron
Rh3AG063800.1

Sequence Viewer

Length: 276 bp
ATGAGTTTGACAGCTTCGAAGATGTGCTTAAACTTTATGATCGAAGGAGGGATTCCTTTGCCTCAAGGTTTATTAAAGGATATTGGGGACAACATCCCAGTGGAGATGCTCAAGGAAATTCTACGAACCGATGGTGAAAATTTCCTCAGGTTCCGAGTGCCTCAAGTGATCAAAGAGGATAAGACTGCTTGGAGGACTGATGAAGAATTTGCCAGAGAAATGTTGGCTGGAGTTAACCCTGTCACCATTCAGTGTCTCCAAGTAATCTTCACATAA

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

4.85

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 13 - 88 2.6e-18 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019914)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0455071
rosa_samantha Rh3AG063800 Rh3AG064400 Rh3BG066200 Rh3BG066300 Rh3CG064600 Rh3CG064700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 117, 139, 206
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 117, 139, 206
AsuHPI GGTGA 2 cut(s) 146, 235
AsuII TTCGAA 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 146
BccI CCATC 1 cut(s) 125
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 3 cut(s) 48, 95, 147
Bse1I ACTGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 17
Bsp143I GATC 2 cut(s) 39, 168
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 17
BsrI ACTGG 1 cut(s) 98
BssMI GATC 2 cut(s) 39, 168
BstBI TTCGAA 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 2 cut(s) 42, 171
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 39, 168
Bsu36I CCTNAGG 1 cut(s) 146
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 105, 257
CviJI RGCY 2 cut(s) 14, 227
CviKI_1 RGCY 2 cut(s) 14, 227
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 41, 170
DpnII GATC 2 cut(s) 39, 168
Eco81I CCTNAGG 1 cut(s) 146
FaiI YATR 2 cut(s) 38, 274
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 101
FbaI TGATCA 1 cut(s) 168
FokI GGATG 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 249
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 52
HpaI GTTAAC 1 cut(s) 235
HphI GGTGA 2 cut(s) 146, 235
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 39, 168
LpnPI CCDG 5 cut(s) 111, 133, 213, 226, 252
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 41, 170
MboI GATC 2 cut(s) 39, 168
MboII GAAGA 3 cut(s) 31, 215, 259
MluCI AATT 3 cut(s) 117, 139, 206
MnlI CCTC 6 cut(s) 41, 72, 155, 169, 171, 186
MseI TTAA 3 cut(s) 29, 74, 234
MslI CAYNNNNRTG 1 cut(s) 98
NdeII GATC 2 cut(s) 39, 168
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 241
NspV TTCGAA 1 cut(s) 17
PfeI GAWTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 29, 74, 234
Sau3AI GATC 2 cut(s) 39, 168
SetI ASST 3 cut(s) 16, 70, 152
SfaNI GCATC 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 63, 110, 162
SmoI CTYRAG 3 cut(s) 63, 110, 162
Sse9I AATT 3 cut(s) 117, 139, 206
TaqI TCGA 2 cut(s) 17, 42
TasI AATT 3 cut(s) 117, 139, 206
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 29, 74, 234
Tru9I TTAA 3 cut(s) 29, 74, 234
TscAI CASTG 2 cut(s) 105, 257
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 2 cut(s) 105, 257
XapI RAATTY 3 cut(s) 117, 139, 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.