Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019914

Physical Location & Seq

Genomic Coordinates Forward (+)

4462108 .. 4463962

Gene Structure 1855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATCGAGCTAGCTTGTGTTAATTTTGTAGCAAACGGGTTGCAAGGGAAAGTTGGAAAGGCAGCATACTTAGAAAACTGGTTCACCACAGTCACACCCATAACAGCAGGAGAGTCTGTTTTTAGTGTCACCTTTGACTGGGAAGAGGAAATCGGAGTTCCAGGAGCGTTCTTGATAAGAAACAATCATCACAGTGAGTTTTATCTTAAGACTGTCACACTCGAAGATATTCCGGATGAGGGCAGGATCCACTGTTTGCAACTCTTGGGTGTACCCTGCAGCCAAATACATTCAAACAGAGACAGTAGGTTGAACCTTCTTCTGAGCCTAAACATTTATGTTCCGAGAGATGAACGATTTGGCCACTTGAAGTTGGCAGACTTTCTTACTTACGGTTTAAAATCCATAGCTCAGTTCTTTAGAACGGAGCTTGAGGCTTTCTTTGATGACACTCCCAACGAGTTTGACAGCTTCGAAGATGTGCTTAAACTTTATGAAGGAGGGATTCCTTTGCCTCAAAGTTTATTAAAGGATATTGGGGACAACATCCCAGTGGAGATGCTCAAGGAAATTCTACGAACCGATGGTGAAAATTTCCTCAGGTTCCCAGTGCCTCAAGTGATCAAAGAGGATAAGACTGCTTGGAGGACTAATGAAGAATTTGCCAGAGTAATGTTGGCTGGAGTTGACCCTGTCACCATTCAGCGTCTCCAAAAATTTCCACCAGCAAGCCAGCCGGATCCAACAGTTTACGGTGATCAAACCAGTACAATAACAGAACAGCACATAAAGGATAACTTGGAAGGGCTTTCAATAGATGAGGCAATCGAGAACAAGAAGCTATTCATATTAGATCATCATGATGCCTTTATGCCGTACCTGAGGCGTTATTTAGGACAGGAAGAGCAGAAGAGGGAAGGAAGAGAGCATTATGAATTGCCCTATTTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

317

Amino Acids

36.39

Weight (kDa)

4.84

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	11 - 82	4.8e-11	PLAT/LH2 domain
Lipoxygenase	PF00305	98 - 302	4.3e-65	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019914)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455071
rosa_samantha	Rh3AG063800 Rh3AG064400 Rh3BG066200 Rh3BG066300 Rh3CG064600 Rh3CG064700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	232
AclWI	GGATC	4 cut(s)	241, 254, 734, 747
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	4 cut(s)	570, 592, 659, 716
AfaI	GTAC	3 cut(s)	273, 769, 878
AfiI	CCNNNNNNNGG	2 cut(s)	138, 239
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	294, 313, 370, 813
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	10, 14, 410, 430, 471, 841
AluI	AGCT	6 cut(s)	10, 14, 410, 430, 471, 841
Alw26I	GTCTC	2 cut(s)	294, 713
AlwI	GGATC	4 cut(s)	241, 254, 734, 747
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	62, 279
ApoI	RAATTY	4 cut(s)	570, 592, 659, 716
Asp700I	GAANNNNTTC	2 cut(s)	228, 842
AsuHPI	GGTGA	5 cut(s)	76, 121, 599, 688, 767
AsuII	TTCGAA	1 cut(s)	474
AsuNHI	GCTAGC	1 cut(s)	10
AxyI	CCTNAGG	2 cut(s)	599, 881
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	2 cut(s)	246, 739
BbvI	GCAGC	2 cut(s)	74, 291
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	859
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	2 cut(s)	621, 757
BcoDI	GTCTC	2 cut(s)	294, 713
BfaI	CTAG	2 cut(s)	11, 952
BfmI	CTRYAG	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	63, 280
BlsI	GCNGC	2 cut(s)	64, 281
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	248, 605, 741
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	3 cut(s)	148, 545, 602
BmsI	GCATC	2 cut(s)	549, 853
BmtI	GCTAGC	1 cut(s)	14
BmuI	ACTGGG	3 cut(s)	148, 545, 602
BpmI	CTGGAG	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	3 cut(s)	452, 548, 600
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 239
Bse1I	ACTGG	5 cut(s)	83, 143, 551, 608, 765
Bse21I	CCTNAGG	2 cut(s)	599, 881
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	241, 546
BseLI	CCNNNNNNNGG	2 cut(s)	138, 239
BseMII	CTCAG	4 cut(s)	314, 425, 613, 872
BseNI	ACTGG	5 cut(s)	83, 143, 551, 608, 765
BseXI	GCAGC	2 cut(s)	74, 291
BshFI	GGCC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	233, 737
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	138, 239
BsmAI	GTCTC	2 cut(s)	294, 713
BsmBI	CGTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	474
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	4 cut(s)	315, 424, 612, 873
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	3 cut(s)	248, 605, 741
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	4 cut(s)	241, 254, 734, 747
BspQI	GCTCTTC	1 cut(s)	897
BspT104I	TTCGAA	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	5 cut(s)	83, 143, 551, 608, 765
BssMI	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	8 cut(s)	91, 194, 214, 254, 305, 395, 748, 755
Bst6I	CTCTTC	4 cut(s)	138, 897, 905, 916
BstAFI	CTTAAG	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	12, 730, 734
BstDEI	CTNAG	5 cut(s)	70, 323, 411, 599, 881
BstF5I	GGATG	2 cut(s)	241, 546
BstKTI	GATC	7 cut(s)	6, 249, 624, 742, 760, 856, 951
BstMAI	GTCTC	2 cut(s)	294, 713
BstMBI	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	74, 291
BstX2I	RGATCY	2 cut(s)	246, 739
BstYI	RGATCY	2 cut(s)	246, 739
Bsu36I	CCTNAGG	2 cut(s)	599, 881
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	241, 546
BtsIMutI	CAGTG	4 cut(s)	199, 250, 558, 615
Cac8I	GCNNGC	3 cut(s)	12, 730, 734
CciI	TCATGA	1 cut(s)	859
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	272, 768, 877
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	3 cut(s)	272, 768, 877
DdeI	CTNAG	5 cut(s)	70, 323, 411, 599, 881
DpnI	GATC	7 cut(s)	5, 248, 623, 741, 759, 855, 950
DpnII	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	4 cut(s)	138, 897, 905, 916
EarI	CTCTTC	4 cut(s)	138, 897, 905, 916
Eco81I	CCTNAGG	2 cut(s)	599, 881
EcoRII	CCWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	1 cut(s)	863
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 782, 814
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	859
FbaI	TGATCA	2 cut(s)	621, 757
Fnu4HI	GCNGC	2 cut(s)	63, 280
FokI	GGATG	2 cut(s)	248, 533
Fsp4HI	GCNGC	2 cut(s)	63, 280
FspBI	CTAG	2 cut(s)	11, 952
GluI	GCNGC	2 cut(s)	63, 280
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	233, 737
HgaI	GACGC	1 cut(s)	695
Hin1II	CATG	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	113, 505
HpaII	CCGG	2 cut(s)	233, 737
HphI	GGTGA	5 cut(s)	76, 121, 599, 688, 767
Hpy166II	GTNNAC	4 cut(s)	84, 272, 688, 751
Hpy188I	TCNGA	3 cut(s)	155, 324, 345
Hpy188III	TCNNGA	4 cut(s)	172, 233, 829, 860
Hpy8I	GTNNAC	4 cut(s)	84, 272, 688, 751
HpyAV	CCTTC	4 cut(s)	326, 491, 797, 911
HpyCH4III	ACNGT	8 cut(s)	91, 194, 214, 254, 305, 395, 748, 755
HpyCH4V	TGCA	3 cut(s)	43, 259, 279
HpyF3I	CTNAG	5 cut(s)	70, 323, 411, 599, 881
Hsp92II	CATG	1 cut(s)	863
Kpn2I	TCCGGA	1 cut(s)	232
Ksp22I	TGATCA	2 cut(s)	621, 757
Kzo9I	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	2 cut(s)	164, 427
Lsp1109I	GCAGC	2 cut(s)	74, 291
LweI	GCATC	2 cut(s)	549, 853
MaeI	CTAG	2 cut(s)	11, 952
MaeIII	GTNAC	4 cut(s)	91, 127, 214, 694
MalI	GATC	7 cut(s)	5, 248, 623, 741, 759, 855, 950
MboI	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
MboII	GAAGA	8 cut(s)	155, 236, 311, 488, 668, 914, 922, 933
MflI	RGATCY	2 cut(s)	246, 739
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	6 cut(s)	22, 570, 592, 659, 716, 935
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	34, 767
Mox20I	TGGCCA	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	232
MroXI	GAANNNNTTC	2 cut(s)	228, 842
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	5 cut(s)	21, 207, 398, 486, 527
MslI	CAYNNNNRTG	3 cut(s)	192, 551, 861
Msp20I	TGGCCA	1 cut(s)	363
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	2 cut(s)	233, 737
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
NdeII	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	3 cut(s)	248, 605, 741
NmuCI	GTSAC	4 cut(s)	91, 127, 214, 694
NspV	TTCGAA	1 cut(s)	474
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	897
PdmI	GAANNNNTTC	2 cut(s)	228, 842
PfeI	GAWTC	1 cut(s)	505
PflFI	GACNNNGTC	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	64, 281
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	248, 605, 741
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	246, 739
PsyI	GACNNNGTC	1 cut(s)	692
RsaI	GTAC	3 cut(s)	273, 769, 878
RsaNI	GTAC	3 cut(s)	272, 768, 877
RseI	CAYNNNNRTG	3 cut(s)	192, 551, 861
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	5 cut(s)	21, 207, 398, 486, 527
SatI	GCNGC	2 cut(s)	63, 280
Sau3AI	GATC	7 cut(s)	3, 246, 621, 739, 757, 853, 948
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	549, 853
SfcI	CTRYAG	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	192, 551, 861
SmlI	CTYRAG	4 cut(s)	206, 431, 563, 615
SmoI	CTYRAG	4 cut(s)	206, 431, 563, 615
Sse9I	AATT	6 cut(s)	22, 570, 592, 659, 716, 935
SspMI	CTAG	2 cut(s)	11, 952
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	8 cut(s)	91, 194, 214, 254, 305, 395, 748, 755
TaqI	TCGA	4 cut(s)	6, 222, 474, 828
TasI	AATT	6 cut(s)	22, 570, 592, 659, 716, 935
TatI	WGTACW	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	5 cut(s)	21, 207, 398, 486, 527
Tru9I	TTAA	5 cut(s)	21, 207, 398, 486, 527
TscAI	CASTG	4 cut(s)	199, 257, 558, 615
TseFI	GTSAC	4 cut(s)	91, 127, 214, 694
TseI	GCWGC	2 cut(s)	62, 279
Tsp45I	GTSAC	4 cut(s)	91, 127, 214, 694
TspDTI	ATGAA	5 cut(s)	366, 510, 669, 835, 948
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	4 cut(s)	199, 257, 558, 615
Tth111I	GACNNNGTC	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	206
XapI	RAATTY	4 cut(s)	570, 592, 659, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmnI	GAANNNNTTC	2 cut(s)	228, 842
XspI	CTAG	2 cut(s)	11, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.